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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggtttaattccttttgctctgctttcaagaaagcaaatattcagtatggtttaatttctcaaccgttgaatcatctgaatgttatttggtttggta...

Basic information

species Zea mays
transcript GRMZM2G325131_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G325131_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g38950.1 (Oryza sativa), 5'ss of exon 6
GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta-attccttttgctctgctttcaagaaag-----caaatattcagtatggtttaatttctcaaccgttgaatcat-ctgaatgttatttggtttggta
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GAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAAgtattgtttctacactatttactcattttttttcattttcttccaaattctcatggtgttttagtctgcattaagttccatcttgctgcatagcatcaat-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105962|gb|DV524380.1|DV524380
EST:     AAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: AAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|16920775|gb|BM074824.1|BM074824
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACATCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|31354238|gb|CD438595.1|CD438595
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|44901120|gb|CK827665.1|CK827665
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|211331403|gb|FL462816.1|FL462816
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|18163922|gb|BM333761.1|BM333761
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|5740708|gb|AI948398.1|AI948398
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|211412150|gb|FL109914.1|FL109914
EST:     TACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCTGCGAGGTACCACAGSTTGGTCATTGAGCAAGAAACCTT
genomic: TACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33099441|gb|CF059401.1|CF059401
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGT
EST: gi|149102824|gb|EE288168.2|EE288168
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|211435759|gb|FL463295.1|FL463295
EST:     GGCATTGTTCAATGGCTTGGCCAAA                         CCCTTTTTCTGCCCGCGGGGTACCACAGCTTGGTCATTGAGCAAGAAACC
genomic: GGCATTGTTCAATGGCTT-GCCAAAgtatggttta ... ccatggacagCCCTTTTACTG-CCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACC
EST: gi|18660207|gb|BM500741.1|BM500741
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33099920|gb|CF059880.1|CF059880
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCCTTTACTGCCGCGAGGTACC
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACC
EST: gi|110202087|gb|EC883984.1|EC883984
EST:     TTTATTCCGATGAGGAATTAGGAAAGGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTTCTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: TTTATTACGATGAGGAATTAGGAAA-GGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33099846|gb|CF059806.1|CF059806
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACC
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACC
EST: gi|24769166|gb|CA404295.1|CA404295
EST:     GTTTATTCCGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|37389434|gb|CF631937.1|CF631937
EST:     GTTTATTACGATGAGGAATTAGGATAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33099031|gb|CF058991.1|CF058991
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTA
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTA
EST: gi|211412147|gb|FL109911.1|FL109911
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|18173984|gb|BM349372.1|BM349372
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33099524|gb|CF059484.1|CF059484
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGT
EST: gi|18168211|gb|BM338057.1|BM338057
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33099508|gb|CF059468.1|CF059468
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGT
EST: gi|86469587|gb|DY235957.1|DY235957
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33100076|gb|CF060036.1|CF060036
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGT
EST: gi|110215812|gb|EC897710.1|EC897710
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|211399741|gb|FL461917.1|FL461917
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCGAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|113701050|gb|EE678554.1|EE678554
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|44901121|gb|CK827666.1|CK827666
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|211412146|gb|FL109910.1|FL109910
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCTGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACCACAGCTTGGTCATTGAGCAAGAAACCTT
EST: gi|33100338|gb|CF060298.1|CF060298
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGT
EST: gi|33099759|gb|CF059719.1|CF059719
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGTACC
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGTACC
EST: gi|33099556|gb|CF059516.1|CF059516
EST:     GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA                         CCCTTTTACTGCCGCGAGGT
genomic: GTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAAgtatggttta ... ccatggacagCCCTTTTACTGCCGCGAGGT