1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccattgacctttgcatatctctgcctctagtataatggttaaggcttccaagtagcatcttcaggtctcgggttcgatccccctcaggggcgaat...
species | Zea mays |
transcript | GRMZM2G324540_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCNCTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211156212|gb|FL365662.1|FL365662
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211089285|gb|FL354017.1|FL354017
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGNGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211206059|gb|FL353696.1|FL353696
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGGACGCTGCCTGCCGTGTTATAGCCCAGATTAAAGAAAGGAAAGAGATEST: gi|211228973|gb|FL343790.1|FL343790
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATG-ACGCTGCCTGCCGTGTTATAGCC-AGATTAAAGAA-GGAAAGAGAT
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211040670|gb|FL334591.1|FL334591
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211158673|gb|FL319015.1|FL319015
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211165501|gb|FL341377.1|FL341377
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211227097|gb|FL350438.1|FL350438
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACNAGAACTTAGTCATGCACTCTACCAG CATGGACGCTGGCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAEST: gi|211108070|gb|FL361613.1|FL361613
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATG-ACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGA
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAAGGAA-GAGATGAEST: gi|211444525|gb|FL325223.1|FL325223
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAA-GGAAAGAGATGA
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211050070|gb|FL348912.1|FL348912
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGGCGTGGTTATTGCCCGATTTAGGAAAGGAAAGAEST: gi|9254345|gb|BE344813.1|BE344813
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTG-TTATAGCCAGATTAAAGAA-GGAAAGA
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211367120|gb|FL319134.1|FL319134
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGANAGAGATGACEST: gi|211096168|gb|FL332998.1|FL332998
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211262919|gb|FL344603.1|FL344603
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTNGCCTGCCGTGTTATAGCCAGATTAAAGAAGEST: gi|211162340|gb|FL348127.1|FL348127
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCT-GCCTGCCGTGTTATAGCCAGATTAAAGAAG
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGGCCGTGT-ATAGCCAGATTAA-GAAGGAAAGAGATGAEST: gi|211411809|gb|FL328773.1|FL328773
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTG-CCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGA
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211170529|gb|FL341423.1|FL341423
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGGCCGTGGTATAGCCAGATTAAAGAAAGGAAAGAGAATEST: gi|211306361|gb|FL348172.1|FL348172
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTG-CCGTGTTATAGCCAGATTAAAGAA-GGAAAGAGA-T
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211314342|gb|FL341215.1|FL341215
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGGCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|148945896|gb|EC891188.2|EC891188
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|67020062|gb|CO448811.1|CO448811
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGACEST: gi|211108071|gb|FL361614.1|FL361614
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTGCCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAC
EST: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG CATGACGCTGNCCTGCCGTGGTATAGNCAGATTAAAGAAAGAAAGAGATGA
genomic: AGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccatt ... tcccttccagCATGACGCTG-CCTGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTTCACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttccattgacctttgcatatctctgcctctagtataatggttaaggcttccaagtagcatcttcaggtctcgggttcgatccccctcaggggcgaat
- - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC