1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGCACCTTTTGAGCAAAACATTATAAATGATGATTTCACTCAAACAACTGATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAGgtattgtgtctttggctattattttaggtcaaaatagcactatttcattgaaaattcatgaaatgcaatagtattttgcag
species | Zea mays |
transcript | GRMZM2G322090_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAG GCATAAGTTTGACAATGGTGATGGCACTTCATGCAAGCEST: gi|32937961|gb|CF042780.1|CF042780
genomic: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAGgtattgtgtc ... tattttgcagGCATAAGTTTGACAATGGTGATGGCACTTCATGCAAGC
EST: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAG GCATAAGTTTGACAATGGTGATGGCACTTCATGCAAGCGTTGTAGTTGTAAEST: gi|32932949|gb|CF037761.1|CF037761
genomic: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAGgtattgtgtc ... tattttgcagGCATAAGTTTGACAATGGTGATGGCACTTCATGCAAGCGTTGTAGTTGTAA
EST: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAG GCATAAGTTTGACAATGGTGATGGCACTTCATGCAAGCGTTGTAGTTGTAAEST: gi|32932446|gb|CF037258.1|CF037258
genomic: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAGgtattgtgtc ... tattttgcagGCATAAGTTTGACAATGGTGATGGCACTTCATGCAAGCGTTGTAGTTGTAA
EST: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAG GCATAAGTTTGACAA
genomic: GATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAGgtattgtgtc ... tattttgcagGCATAAGTTTGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCACCTTTTGAGCAAAACATTATAAATGATGATTTCACTCAAACAACTGATGTTGCAACTGCCGAAGCTTCTAGTCAGGGTAGTCCCAAGAAGAAAAGgtattgtgtctttggctattattttaggtcaaaatagcactatttcattgaaaattcatgaaatgcaatagtattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA