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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagttgctttcatcacctaaacagagtttctcttatttatgtaagggcttccaacatgctttaatacgtctcctgctggtctaattatgaacttaatttgtctgcag

Basic information

species Zea mays
transcript GRMZM2G320307_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G320307_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g47790.1 (Oryza sativa), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagttgctttcatcacctaaacagagtttctcttatttatgtaagggcttccaacatgctttaatacgtctcctgctggtctaattatgaacttaatttgtctgcag
|| |||||| | |||||||| ||||| |||||||| ||||||||||||||||| || ||||| || |  || ||||||||||||||| | |||||||||||||||||  || ||  ||    || |||       | |||||| |||  ||   ||  | |||  |  | | |     || |  |    || ||||   |            
GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagtatctgattgaattcggtataca-------ttttatttttgtggggatctc-gatatgaatataaatgatgtgtgtt--ttgtgttctgaatgcag-----------

upper sequence: GRMZM2G320307_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G14500.1 (Glycine max), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagttgctttcatcaccta-aacagagtttctcttatttatg-taagggcttccaacatgctttaatacgtctcctgctggtctaatt-atgaacttaatttg-----tctgcag-----------------------------
|||||||||||||||||||| ||||| || ||||||||||||||| | || || |  || || || |  || || |||||||| |||||| |||| |||||||||||  | |||  |  || |    ||         ||||  ||  | ||    |  |   ||  | || |  || | ||  | ||||||  |||||   || ||           ||                             
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaat-aaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag

upper sequence: GRMZM2G320307_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G07970.1 (Glycine max), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagttgctttcatcacctaaacagagtttctcttatt-tatgtaagggcttccaacatgctttaatacgtctcctgctggtctaa-ttatgaacttaatttgtctgcag-----------------------------------------------
|||||||||||||||||||| ||||| || ||||||||||||||| | || || |  || || || |  || || ||||||||||||||| |||| |||||||||||  || ||| |  || |      | |  |  || ||  ||     |  |    |  ||| | | |   |||       ||  || || |     ||||   |    |                                                
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagta-ctgtttttaaaacttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagttattctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag

upper sequence: GRMZM2G320307_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S269_53V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaag---tagttgctttca--tcacctaaacagagtttctcttatttatgtaagggc-ttccaacatgct--ttaatacgtctc-ctgctggtct------aattatgaacttaatttgtctgcag-------------------------------------------------------------------------
|||||||| ||||| |||||||||||||| ||||||||||| || ||  |       ||    |||   || |||||||| ||||| ||  |  |||||||||||    | ||||    |  | | |     | |  |    | ||||    |    |  | ||  || |   ||| |  |  |  || ||||| |       |   |||  |  | | | ||| ||                                                                         
GCTGTTGTGATTGGCGGTGGCTACATTGGGATGGAGTGTGCCGCAGCCCTCCACGGGAATCGTATTCCTGTGACCATGGTGTTCCCGGAAGATTACTGCAgtaagaatcaattgcccctagtttatcagggaaaatatgacgtgatttcaacattatcactgcagtatccgaattagtgagagtggcttctggtttttgagagacattgaggtggagtggactgtagttggatgcgtgatgaggttgccattggcataccacgtccagagtattctaaatggacttggtggtatttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78112090|gb|DV530486.1|DV530486
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|211343496|gb|FL158171.1|FL158171
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACC
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACC
EST: gi|74239090|gb|DT647004.1|DT647004
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAAATGCAGAATTTTATGAAAACTAC
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTAC
EST: gi|76294433|gb|DV034001.1|DV034001
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|149014462|gb|EE044078.2|EE044078
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|93014386|gb|EB639906.1|EB639906
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAA-TTGCAGAATTTTATGAAAACTACT
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACT
EST: gi|74236111|gb|DT644025.1|DT644025
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACT
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACT
EST: gi|13198566|gb|BG354385.1|BG354385
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|148957305|gb|EC903342.2|EC903342
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|87155794|gb|DY400583.1|DY400583
EST:     GGTTACTAACAAGATAAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAA-TTGCAGAATTTTATGAAA-CTACTA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTA
EST: gi|148969919|gb|EE020823.2|EE020823
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|76015963|gb|DT943133.1|DT943133
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|74233733|gb|DT641647.1|DT641647
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
EST: gi|148949714|gb|EC895192.2|EC895192
EST:     GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCA                         TGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA
genomic: GGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagtt ... ttgtctgcagTGGGTCGTCTATTTACACCAAAAATTGCAGAATTTTATGAAAACTACTACA