Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGAAACATTTATGGCTCCACACGTTCTTGCGATGTCAGCTACCCCTATTCCAAGAACATTGGCACTTGCTTTATATGGTGATATGTCTCTTACTCAGgtatgctgctgcagatacgttggtttttcatgtaaggtatagggagtacataatgtaagggtaccacgtccaaaataaacgtaaatctggactaattcta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G315176_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g48100.1 (Oryza sativa), 5'ss of exon 4
TTCTGAAACATTTATGGCTCCACACGTTCTTGCGATGTCAGCTACCCCTATTCCAAGAACATTGGCACTTGCTTTATATGGTGATATGTCTCTTACTCAGgtatgct----gctgcagatacgtt-ggtttttcatgtaaggtatagggagtacataatgtaagggtaccacgtccaaaataaacgtaaatctggac-taattcta
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TTCTGAAATATTTATGGCTCCCCATGTTCTTGCTATGTCCGCTACTCCAATCCCAAGAACGTTGGCTCTTGCTCTGTATGGGGACATGTCCCTTACACAGgtattttacaggcttatggcatataaggcttcgttcgtttcttctgtttggtagttgattttctgca--cacgccaaacgagaaagctcattagtacatgat----
upper sequence: GRMZM2G315176_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv01s0011g04880.t01 (Vitis vinifera), 5'ss of exon 14
TTCTGAAACATTTATGGCTCCACACGTTCTTGCGATGTCAGCTACCCCTATTCCAAGAACATTGGCACTTGCTTTATATGGTGATATGTCTCTTACTCAGgtatg-----ctg-ctgcagatacgttggtttttcatgtaaggtatagggagtacataatgtaagggtaccacgtccaaaataaacg---taaatctggactaattcta
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AGGAGATACACGTATGGCTCCTCATATTCTTGCAATGTCAGCTACTCCTATACCAAGGACACTTGCTCTTGCTTTATATGGAGACATGTCCCTGACACAAgtatgtaaagctgtctttaaatttactagcatgctatata--gttcaggtcatgcttaa---aaagatgtagttctgaaacttagtggtttgtaatttgaacaat----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31355026|gb|CD439383.1|CD439383EST: TTCCAAGAACATTGGCACTTGCTTTATATGGTGATATGTCTCTTACTCAG ATCACGGACCTGCCTCCTGGAAGGCAACCTATTAAAACCCTTGCTCTTGAA
genomic: TTCCAAGAACATTGGCACTTGCTTTATATGGTGATATGTCTCTTACTCAGgtatgctgct ... tttcttatagATCACGGACCTGCCTCCTGGAAGGCAACCTATTAAAACCCTTGCTCTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGAAACATTTATGGCTCCACACGTTCTTGCGATGTCAGCTACCCCTATTCCAAGAACATTGGCACTTGCTTTATATGGTGATATGTCTCTTACTCAGgtatgctgctgcagatacgttggtttttcatgtaaggtatagggagtacataatgtaagggtaccacgtccaaaataaacgtaaatctggactaattcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC