Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatcttgacttgtgctaggttttggttatcagttatgttctacactgtgctatttcaaatgtgggtctgttctatgttagatggttctgtgaatt...

Basic information

species Zea mays
transcript GRMZM2G314679_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G314679_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g21250.1 (Oryza sativa), 5'ss of exon 5
GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct----tgacttgtgctaggttttggttatcagttatgttctacactgtgctatttcaaatgtgggtctgttctatgttagatggttctgtgaatt
|||||||||||||||| ||||||| || |||||  |||| ||||||||||||||||| ||||||||||| ||||| ||||||   | |    |||  | |||||  |||     | | ||| | ||||| |   |   ||  |||   |   |   |  |||  |   |  ||  ||  |  
GGGTGATGTTGAGAAGAGGACTGCACTCGAGAATCTGGACTTGATACTTCTCTGCATCGATGAAATTGTAGATGGCGGgtaatggtttcttgtgatctatgctacatttgtaccacctgtt-tcttctaaaaaatcacatg-caagcattcctgactattatacttttttttttcgtaca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357552|gb|CD441909.1|CD441909
EST:     GAAAACTTGGATTTGATACTTCTCTGCATCGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGGAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|211411155|gb|FK961654.1|FK961654
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|60356728|gb|DN223701.1|DN223701
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|32849532|gb|CD989213.1|CD989213
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|15323565|gb|BI478787.1|BI478787
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|4681229|gb|AI629899.1|AI629899
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|32908218|gb|CF013031.1|CF013031
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|87157301|gb|DY402090.1|DY402090
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|7137590|gb|AW499170.1|AW499170
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGG
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGG
EST: gi|32938645|gb|CF043464.1|CF043464
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|4646698|gb|AI491558.2|AI491558
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACCCCATCGCTGGTAAGGATGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|5296305|gb|AI783075.1|AI783075
EST:     GAGAACTTGGATTTGATACTTCTCTGCATCGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|22819508|gb|BU499598.1|BU499598
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|56382683|gb|CV985352.1|CV985352
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|62550301|gb|DN830721.1|DN830721
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|5928724|gb|AW055941.1|AW055941
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|5901227|gb|AW042327.1|AW042327
EST:     GAGAACTTGGATTTGATACTTCTCTGCATCGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|16925380|gb|BM078448.1|BM078448
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|6227104|gb|AW155808.1|AW155808
EST:     GAGAACTTGGATTTGATACTTCTCTGCATCGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGNTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA