1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGACAATGATGGAATTGTATCTTATGAAGAACTGAAGACTGGAATAGCAAAACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCTgtaagtattcacagaattatcctagaaacagataaagtagacttctgtatttactatttactttgaacttagaagtcttaggtggttaacaaataccatt...
species | Zea mays |
transcript | GRMZM2G311220_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCT GTGGACACAAACGGTAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTCEST: gi|211215229|gb|FL184707.1|FL184707
genomic: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCTgtaagtattc ... cggcgtgcagGTGGACACAAACGGGAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTC
EST: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCT GTGGACACAAACGGGAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTCEST: gi|78119680|gb|DV538064.1|DV538064
genomic: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCTgtaagtattc ... cggcgtgcagGTGGACACAAACGGGAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTC
EST: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCT GTGGACACAAACGGGAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTCEST: gi|211215232|gb|FL184710.1|FL184710
genomic: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCTgtaagtattc ... cggcgtgcagGTGGACACAAACGGGAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTC
EST: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCT GTGGACACAAACGGGAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTC
genomic: AACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCTgtaagtattc ... cggcgtgcagGTGGACACAAACGGGAGGGGGGCACTAGACTACGGGGAATTTCTGGCCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAATGATGGAATTGTATCTTATGAAGAACTGAAGACTGGAATAGCAAAACTTGGTTCTCATCTTGCGGAATCAGAAGTACAGATGCTCATTGAAGCTgtaagtattcacagaattatcctagaaacagataaagtagacttctgtatttactatttactttgaacttagaagtcttaggtggttaacaaataccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC