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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTGgtaagttcatcacccaaagcataaacacttctgttgcccgtatacagttctttctttctgactcttgtacatcttaaatttcag

Basic information

species Zea mays
transcript GRMZM2G311165_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G311165_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 4
GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTGgtaagttcatc-----acccaaagcataaacacttctgttgcccgtatacagttctttctttctgactcttgtacatcttaaatttcag---
|  |||||||||||||||||||||| || || ||  | ||||| || ||||| ||||||||| ||||| |      ||| || || ||| || |||  ||||  |  |   ||||| | |||     | ||   ||| | || |||      
GTTCTCTAGGACTAATATCAAGGCTGAACATAGGTTCCCTTGATCTTGGAGATTATCTTGgtcagttcttatatgaacctaatgcgtaagcatttcgattgcatgcctgtggttctgtgttttgacttgttccgcatgtgaacttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116824436|gb|EC868056.1|EC868056
EST:     ACTAATATC-AGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG                         CACTTGGGGCAATATTCTCGGCCACAGACTCGGTTTGCACCTTGCAGGTGT
genomic: ACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTGgtaagttcat ... taaatttcagCACTTGGGGCAATATTCTCGGCCACAGACTCGGTTTGTACCTTGCAGGTGT
EST: gi|19057804|gb|BM736471.1|BM736471
EST:     ACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG                         CACTTGGGGCAATATTCTCGGCCACAGACTCGGTTTGCACCTTGCAGGTGT
genomic: ACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTGgtaagttcat ... taaatttcagCACTTGGGGCAATATTCTCGGCCACAGACTCGGTTTGTACCTTGCAGGTGT
EST: gi|116820150|gb|EC863342.1|EC863342
EST:     ACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG                         CACTTGGGGCAATATTCTCGGCCACAGACTCGGTTTGCACCTTGCAGGTGT
genomic: ACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTGgtaagttcat ... taaatttcagCACTTGGGGCAATATTCTCGGCCACAGACTCGGTTTGTACCTTGCAGGTGT
EST: gi|32831753|gb|CD971431.1|CD971431
EST:     ACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG                         CACTTGGGGCAATATT
genomic: ACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTGgtaagttcat ... taaatttcagCACTTGGGGCAATATT