1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactcattccgatttactttttcttggagaattaactattagaatgttttctttctttggtag
species | Zea mays |
transcript | GRMZM2G305254_T06 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAG GATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAEST: gi|148936664|gb|EC880790.2|EC880790
genomic: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccg ... tctttggtagGATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACA
EST: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAG GATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCEST: gi|160481497|gb|EY254329.1|EY254329
genomic: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccg ... tctttggtagGATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCC
EST: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAG GATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCEST: gi|149107780|gb|EE292141.2|EE292141
genomic: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccg ... tctttggtagGATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCC
EST: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAG GATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCC
genomic: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccg ... tctttggtagGATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactcattccgatttactttttcttggagaattaactattagaatgttttctttctttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG