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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgcctgccttgcgtactccctctgattccaaaggattcatcatggaaaaatactttcatagcatatagctttgagtaattc...

Basic information

species Zea mays
transcript GRMZM2G305159_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 4
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgc---ctgccttgcgtactccctctgattccaaaggattcatcatggaaaaatactttcatagcatatagctttgagtaattc-
|||||||||||| || || || |||||||||||||||||||||||||||||| ||   |||||||| || || || || ||||| ||  | || |||||||||| | |    |||| |  |     |   |||  |  | |||||    ||  |  ||      |   |   |   || | ||     ||   || | ||| | 
GTATCAAGAGGTTGTTGCGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGgtatctatgaatgtttttcggtaatttatgttgttttattcctctatgaccttaatatgttcggtttgagcgtgtcttga-agtg---agaactgggaaatgcc

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgag-tttctatgcc-tgccttgcgtactccctctgattccaaaggattcatcatggaaaaatactttcatagcatatagctttgagtaattc
|| |   ||||| || || |||||||||||||||||||||||||| || ||| ||  |||||||||||| || || || ||||| ||  | || |||||||| |||   |  | ||| | | |  ||   ||  |  |     | | |  |   | ||| |  |       |   ||  | || |      |||  |  |  
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgcccatgatttgtttactatggtgtgtctgatggtattaagtgtagcag-ttctttgtactgtttttgctttgttgcttggcatcttgttttttc-

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA12G01360.1 (Glycine max), 5'ss of exon 5
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgcctgccttgcgtactccctc-tgatt--ccaaaggattcat--catggaaaaatactt-tcatagcata-tagctttgagtaattc
 | | | ||||| |||||||| ||||||||||| ||||||||||| ||||| |||  |||| | || || || || || ||||| ||||| || || ||||| ||| |   | |       | | |  |    | ||| || ||| |  |||   | | |||  |||   | | | | |  |||    |  | || |||        
TTTTTATGAGGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCTCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCAGGGACAGAGgtttgtttgttactacacccacattctatataaaatccttcatgacttaccatttgttccatgccatctgagattgcgtgccattatctgcttgccttgt-------

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G35970.1 (Glycine max), 5'ss of exon 4
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgcctgccttgcgtactccctctgattccaaaggattcatcatggaaaaatactttcatagcatata-gctttgagtaattc--
 | | | ||||| |||||||| ||||||||||| ||||||||||| ||||| |||  |||| | || || || || || ||||| ||||| || || |||||  || |   |  ||  |  |   |  |   || |  |  | ||  |  |  ||| || || |     | |  ||  ||  |||  |||||   |   ||  
TTTTAATGAGGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCTCCAGCTTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCAGGGACAGAGgttagtttgtta--ttacacccacactctatataatatccttcatgacttaccatttat-attgttccgtgccatctgagattatgtgctttctttgtatctt

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 4
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgcctgccttgcgtactccc-tctgattccaaaggattcatcatggaaaaatactttcatagcatatagctttgagtaattc
|| |   ||||| || || |||||||||||||||||||||||||| || ||| ||  |||||||||||| || || || ||||| || || || || ||||| |||   |  | ||   |  ||    ||  |    |  | | |     |    |||||  |       |   ||  | || |      |||  |||   
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATAGCTGGAACAGAGgtttgtgcccatgattgatttactatggtgtatctgacggtattacgtgtagcagttcattgtactgtttttgcttagttgcttggcatcttgtttaaga-

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 5
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgcctgccttgcgtactccctctgattccaaaggattca-tcatggaaaaatactttcatagcatat--agctttgagtaattc-
||     ||||| || || |||||||| |||||||| ||||||||||| ||| || ||||| ||||||| || || || ||||| || || || |||||||| ||| |      || | | | |    ||   | ||   | | | | |   | || | |  ||  ||    | | |||    | |  || | | ||   ||  
GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatct---cttgtgtac-tattatgataattctgacagttacgagttgttttagttttgttaattctcctgcattatgttttaagatataaggtgttat

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 4
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgc--ctgccttgcgtactccctctgattccaaaggattcatcatggaaaaatactttcatagcatatagctttgagtaattc
      |||||| || ||||| ||||| |||||||| |||||||| || ||||||  |||| | ||||| || || ||||||||||| || || || ||||||    || |   | || ||   |||  ||    | ||  | | |   | | |  |||   |||  |||| |||  |   | ||| | |    ||      
AATGGGAGAGGTAGTTGCAGTGACTGGGGATGGAACAAATGATGCTCCTGCATTGCATGAGGCTGACATTGGACTTGCCATGGGAATAGCTGGAACAGAGgtagcctttggttctcctctgttactgagttattaaatcattgtaaaatcgatg--ttctctatgttaaaa-actcccgc-gtatacaacacacag------