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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatattcagtaatcagtaatttattatatggaggctacaaattgttgagctgtttgaaaacag

Basic information

species Zea mays
transcript GRMZM2G303631_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatattcagtaatcagtaatttattatatggaggctacaaattgttgagctgtttgaaaacag
| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| || ||||||||||||  || ||||||||  |         | |  | || || ||| ||  ||  ||  || || |  | | ||||| ||||| || ||||
GAAAGCTTGAAAGGAAAGCTGTCCTCAAAGCTATATGTGCTGGCTTTGAAGAAACTACCGAGCCAAATGTTTGTCTTAGTGATGgtaagt-ca-ataaactacat---------tttcgactattctgtatttagttgaatacagactgctgagtcttgagttgtttcaatacag

upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatattcagtaatcagtaatttattatatggaggctacaaattgttgagctgtttgaaaacag
| ||  | ||||     ||||| || || ||||| ||| |||| |||||||||||||| ||||||| ||||||| ||||   ||| |||    ||     | ||||     | |||    | ||  | || ||| | |  ||     | |  | ||     || | ||    |||
GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAACTGTTTGCTTGAGCAGTGgcaagtgtttacttttttttta----ttcatacaaggaaaata-tactttgtgacctgattctttctgactggcatactttatgggg-cag

upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatattcagtaatcagtaatttattatatggaggctacaaattgttgagctgtttgaaaacag-----------
| ||  | ||||     |||||  | |||||||| |||||||||||||| |||||||| ||||||  ||||||  ||||   ||||||   |  |    || ||             ||  |  |   | | || |||  |     |    |||||||     | ||| |||              
GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGgtaaatgctgactttcttttggttgtggggggatctatttttgtttacttgttagttttgaacc-tgaattgttttttgggttgcaaatcttctcttggcag

upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatattcagtaatcagtaatttattatatggaggctacaaattgttgagctgtttgaaaacag-----------
| ||  | ||||     |||||  | |||||||| |||||||||||||| |||||||| ||||||  ||||||  ||||   ||||||   |  |    || ||             ||  |  |   | | || |||  |     |    |||||||     | ||| |||              
GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAGAAACTACCGAACCAGCTGTTTGTTTGAGCAGTGgtaaatgctgactttcttttggttgtggggggatctatttttgtttacttgttagttttgaacc-tgaattgttttttgggttgcaaatcttctctcggcag

upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatattcagtaatcagtaatttattatatggaggctacaaattgttgagctgtttgaaaacag-----------------------------
| ||| | ||||     ||||| || || || |||||| |||||||||||||||| || || ||| |||||||  |||||| ||||||||   ||  |    ||  | ||  | |  || |||      ||| | ||  || ||  |      |  |     |   |   ||                                
GAAAGTTGGAGAAAGGTGCTGTTCTGAAGGCCATTTGTTCTGGTTTTGAGGAAACCACTGAGCCAGATGTTTGTTTGAGTGGTGgtaagcttttaccataagttagatactaagt--tcggtatatccaaatctcttg-attgactcgcttgctcatcagttttccttctaatctatttttttaatggattcttttcctggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5847202|gb|AW000281.1|AW000281
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|5325106|gb|AI783297.1|AI783297
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|211449604|gb|FL033165.1|FL033165
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|211156293|gb|FL375842.1|FL375842
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|32850609|gb|CD990290.1|CD990290
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|91054221|gb|EB164639.1|EB164639
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|211449603|gb|FL033164.1|FL033164
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|211449602|gb|FL033163.1|FL033163
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|211229612|gb|FL380029.1|FL380029
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA
EST: gi|211212797|gb|FL419176.1|FL419176
EST:     TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATG                         ATATAGAGACAAATGAGTGTCTGAWTGACAACGGGGGCTGCTGGCAAGACA
genomic: TTGTGCTGGTTTTGAGGAAACTACAGAACCAAATGTTTGCCTGAGTGATGgtaagcacat ... ttgaaaacagATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACA