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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCATTGCCAAGCAGGATCCCTTCAGGGGTCCCTAGGAGGCTCTTCACCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAAgtaattaggcagtttgttacaatgacttcaggatcttctgctttttatgacttccactttcttcattgatggtcttgtag

Basic information

species Zea mays
transcript GRMZM2G302559_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G302559_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g08430.1 (Oryza sativa), 5'ss of exon 6
ATATTCATTGCCAAGCAGGATCCCTTCAGGGGTCCCTAGGAGGCTCTTCACCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAAgtaattaggcagtttgttacaatgacttcaggatcttctgc----tttttatgacttccac-tttcttcattgatggtcttgtag---------------
 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||| ||  | | ||||||| ||    ||| | ||||||||  ||     | |  ||   ||| |  ||      ||||||  ||| | |               
GTATTCATTGCCAAGCAAGATCCCTTCAGGGGTTCCTAGGAGGCTCTTCACCCCACTTCCTTGGGAACCAAAGTCATTGCAGCATTGGACAGTAGCAAAGgttgtgatgcagtttattt---tgattccaggatctaatgtaaaatgtagatatattcgatgttggaattttgatgtgcttttcgctattgattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154220|gb|DY399009.1|DY399009
EST:     CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAA                         GATTTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
genomic: CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAAgtaattaggc ... ggtcttgtagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
EST: gi|22545328|gb|BU097687.1|BU097687
EST:     CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAA                         GATTTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
genomic: CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAAgtaattaggc ... ggtcttgtagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
EST: gi|26455321|gb|CA826904.1|CA826904
EST:     CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAA                         GATTTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
genomic: CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAAgtaattaggc ... ggtcttgtagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
EST: gi|87154479|gb|DY399268.1|DY399268
EST:     CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTATCAAAA                         GATTTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
genomic: CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAAgtaattaggc ... ggtcttgtagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
EST: gi|26454967|gb|CA826550.1|CA826550
EST:     CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAA                         GATTTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC
genomic: CCCCACTTCCTTGGGAACCCAAGTCGCTCCAGCATTGGACAGTAGCAAAAgtaattaggc ... ggtcttgtagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCC