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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATCTTAGAAGCAACCTATCCTGCTGTTGCGAAGAGACTTCATGGGGACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAGgtatttcatcgacaaacaatttcttcatccatgaggcaacttgtttactgcaactgccatcacttgcag

Basic information

species Zea mays
transcript GRMZM2G300862_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300862_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 5'ss of exon 5
GGATATCTTAGAAGCAACCTATCCTGCTGTTGCGAAGAGACTTCATGGGGACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAGgtatt-tcatcgacaaacaatttcttcatccatgaggcaacttgtttactgcaactgccatcacttgcag-----------------------------
||| ||||| || ||||| ||||||||||||||||||||| | ||||| |||||||| |  ||||||||||||||| |||||||||||||||||||||||||||| ||| |       |  ||| | ||  |  |  | | | ||| | || || ||  || || |                                 
GGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGgtattctcaccagagggta--ttcattatgaagcaaactattagttcattgtaattgttattaccttttcttttagaagtcaatcgtcatcacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31356341|gb|CD440698.1|CD440698
EST:     ACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAG                         GGCTGGAAATCTGGTGCTGAAACTACTTTAGGCCGAGGTGGTAGTGACTTG
genomic: ACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAGgtatttcatc ... tcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTG
EST: gi|67023807|gb|CO452556.1|CO452556
EST:     ACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAG                         GGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTG
genomic: ACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAGgtatttcatc ... tcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTG