1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccactcaacttcacatttcccacccagtatagcacagcatcctcacttccttttctttgttaccattgcag
species | Zea mays |
transcript | GRMZM2G300348_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTEST: gi|149073531|gb|EE161834.2|EE161834
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGT
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|60344179|gb|DN211152.1|DN211152
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|149008705|gb|EE040899.2|EE040899
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|6827537|gb|AW331180.1|AW331180
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|12046181|gb|BF728320.1|BF728320
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|32920900|gb|CF025712.1|CF025712
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTEST: gi|71444099|gb|DR825149.1|DR825149
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGT
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|93283635|gb|EB675899.1|EB675899
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|60338830|gb|DN205803.1|DN205803
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|22521337|gb|BU080148.1|BU080148
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAAATGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|71429312|gb|DR810362.1|DR810362
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|91054432|gb|EB164850.1|EB164850
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTTTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|78104639|gb|DV523057.1|DV523057
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTTTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|50325755|gb|CO520881.1|CO520881
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|78179163|gb|DV549536.1|DV549536
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|76916873|gb|DV166585.1|DV166585
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: GAGCTCTCACAGGCTAGGCAGAGGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATGGAAGCCEST: gi|101401213|gb|EB822285.1|EB822285
genomic: GAGCTCTCACAGGCTA-GCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATGGAAGCCEST: gi|148946927|gb|EC892211.2|EC892211
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|32921193|gb|CF026005.1|CF026005
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTAEST: gi|32849806|gb|CD989487.1|CD989487
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTA
EST: AGGAGGCAGAGAGAGGGGTAACTGAGTTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTEST: gi|32921725|gb|CF026537.1|CF026537
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGT
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTAEST: gi|32795287|gb|CD947523.1|CD947523
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTA
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGGTGTTGTACAGGCAGATCEST: gi|32923712|gb|CF028524.1|CF028524
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACEST: gi|148958127|gb|EC904325.2|EC904325
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTAC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|71775306|gb|DR973184.1|DR973184
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAAATGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCEST: gi|149075799|gb|EE164332.2|EE164332
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
EST: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCA GTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
genomic: AGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccac ... accattgcagGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAgtaagtccactcaacttcacatttcccacccagtatagcacagcatcctcacttccttttctttgttaccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG