Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttctaacacgttgtgatgtatgcatcttgcag

Basic information

species Zea mays
transcript GRMZM2G181194_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g44380.2 (Oryza sativa), 5'ss of exon 5
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggt--------tctaacacgttgtgatgtatgcatcttgcag
 || || |||||| |||| |||||||||||||||||||| || |||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||  |  |||   ||| || |||||  |   |||       || |||   ||||||||| |||||||  || || | |||||| | ||  ||             ||||||  ||| || | | |||   ||||||
TGCTGTGGGTAACTTGTCGATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAGAAGAACTGGCAGAATgtgagttctgttctcaacttcatggcatcagtagttta-----catttctg--atgtttacatgtaatgaaatttatatagtgtaagcccaacaagcaaacacaatcagtctaacttgttatggtttgtgc--tttgcag

upper sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g44380.1 (Oryza sativa), 5'ss of exon 5
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggt--------tctaacacgttgtgatgtatgcatcttgcag-----
    || |||||| |||| |||||||||||||||||||| || |||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||  |  |||   ||| || |||||  |   |||       || |||   ||||||||| |||||||  || || | |||||| | ||  ||             ||||||  ||| || | | |||   ||||||     
----GTGGGTAACTTGTCGATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAGAAGAACTGGCAGAATGTGAgttctgttctcaacttcatggcatcagtagttta-----catttctg--atgtttacatgtaatgaaatttatatagtgtaagcccaacaagcaaacacaatcagtctaacttgttatggtttgtgc--tttgcaggtgag

upper sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatcc--tctggtctttattgcatctat---gccttaagaattgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc------gaaggagttggttctaacacgttgtgat-gtatgcatcttgcag-----
    || |||||| |||| |||||||||||||||||||| || |||||||| |||||| |||||||||||||||| ||| |||| ||||||||||||||||||||| |||   ||||  | |  ||||||  |      ||||    |     |||||          |||  || || | |    ||  | |  || ||||   |||       ||   |     |  | | |  |||  || || ||  | |   ||     
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag

upper sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g44450.3 (Oryza sativa), 5'ss of exon 2
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc--ctctggtctttattgcatctatgc---cttaagaattgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc------gaaggagttggttctaacacgttgtgat-gtatgcatcttgcag
 || || |||||| |||| |||||||||||||||||||| || |||||||| |||||| |||||||||||||||| ||| |||| ||||||||||||||||||||| |||   ||||  | |  ||||||  |      ||||    |     |||||          |||  || || | |    ||  | |  || ||||   |||       ||   |     |  | | |  |||  || || ||  | |   ||
TGCTGTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatag

upper sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtg-atcctctggtctttatt-gcatcta-tgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttctaacacgttgt--gatgtatgcatctt-gcag---
|||  ||||||||     ||||||||| ||||| |||   |||||||  || ||| |  | |||||||||||||| ||  |||||||||||||||||||||| |||  ||    |  | | |||| | ||  | |   |    |  ||||| |||  || ||  || |  | |  |||     |||    |  || |  |  |||| |  |  || |   | || || || || | |    
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattt--tcattattaagtgatggtcatacaatgtctaagttc-agtattttatctaacgtttgaatttttgtaacag

upper sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S18_121V6.1 (Physcomitrella patens), 5'ss of exon 3
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatcctctggtc---tttattgcatctatgccttaagaattgttcctgttgt-gtttacatctaatgaacattt--tagaatgtaagtcgaaggagttggttctaa-cacgttgtgatgtatgcatcttgcag---
 ||  | || ||       ||||||||||||||||||   || ||||  |||||| |  |||||||||| || || || ||||||||||||||||||||||| ||  |    ||       || ||   || |  | | |     || |    ||  | ||||  ||  | |    ||||  | ||   |  ||||  |        |||||  |   |||      |   |||||  |   
TGCCATTGGAAATTGTGACATGGAGGAGAAGCAGATCTTCCAAAACACTCAGATGGGTGTCAACTTCCTTGTATCCCTGCTGAAGAAGAACTGGCAGAATgtaagcaacaaactcaatagtttcatcatatttccgacctgttccttttattcgtattagtttgtattaattcggtatttactcgagcttgcgtcgctgatcacatctctaagtattctgttcatactttttcttgtggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5713971|gb|AI943956.1|AI943956
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|211268446|gb|FL141046.1|FL141046
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGATCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|32943776|gb|CF048595.1|CF048595
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|32841275|gb|CD980956.1|CD980956
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|50325315|gb|CO520441.1|CO520441
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCA
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCA
EST: gi|32930778|gb|CF035590.1|CF035590
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60347511|gb|DN214484.1|DN214484
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|211379030|gb|FL141076.1|FL141076
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|76010849|gb|DT938019.1|DT938019
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60347816|gb|DN214789.1|DN214789
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|76010850|gb|DT938020.1|DT938020
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|67015735|gb|CO444484.1|CO444484
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGNGGAAACCATTCAGGATTTT
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGG-GGAAACCATTCAGGATTTT
EST: gi|67021308|gb|CO450057.1|CO450057
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|32841237|gb|CD980918.1|CD980918
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|19769382|gb|BQ034103.1|BQ034103
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|6020458|gb|AW065386.1|AW065386
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|37396886|gb|CF635737.1|CF635737
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|84980587|gb|DW530936.1|DW530936
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|166474714|gb|EG122102.1|EG122102
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTC
EST: gi|84977553|gb|DW475975.1|DW475975
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|211266012|gb|FL141033.1|FL141033
EST:     ATGAGCATNCA-CTTCCTCGTGTCTCTTTCTGAGGAAGAACTGGCAGAAT                         GTAAAATGTCTCTACATCAAAAGC-CCATGGGGGAAACC
genomic: ATGAGCAT-CAACTTCCTCGTGTCTCTT-CTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGG-AAACC
EST: gi|211107003|gb|FL459237.1|FL459237
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60394592|gb|DN227462.1|DN227462
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|71323607|gb|DR798478.1|DR798478
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|211263568|gb|FL141014.1|FL141014
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60351553|gb|DN218526.1|DN218526
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|6865330|gb|AW360680.1|AW360680
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60345300|gb|DN212273.1|DN212273
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60357767|gb|DN224740.1|DN224740
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60339663|gb|DN206636.1|DN206636
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60347533|gb|DN214506.1|DN214506
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|19821797|gb|BQ047821.1|BQ047821
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGG
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGG
EST: gi|67016173|gb|CO444922.1|CO444922
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGGAAACCATTCAGGATTTT
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGG-AAACCATTCAGGATTTT
EST: gi|71323606|gb|DR798477.1|DR798477
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTTTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTTTACATCAAGAGCCCCATGGGGAAACCATTCAGGATTTTT
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|32934673|gb|CF039485.1|CF039485
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|33093601|gb|CF053595.1|CF053595
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|32930672|gb|CF035484.1|CF035484
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|211242318|gb|FL469539.1|FL469539
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|5018419|gb|AI714612.1|AI714612
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|15323558|gb|BI478780.1|BI478780
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60396150|gb|DN229019.1|DN229019
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|60358826|gb|DN225799.1|DN225799
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|91875746|gb|EB405703.1|EB405703
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|71430187|gb|DR811237.1|DR811237
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
EST: gi|84980668|gb|DW531017.1|DW531017
EST:     AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAAT                         GTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC
genomic: AGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatc ... catcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttctaacacgttgtgatgtatgcatcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC