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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatcttgtgactttatttgctgtttacttactaataaagtatagggcaggcctggtgcaatggtgagagctgtgtcactgccttactaggtcgt...

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 5
GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtg-cttcatcttgtg-actttatttgctgtttacttac---taataaagtatagggcaggcctggtgcaatggtgagagctgtgtcactgccttactaggtcgt
|| |||||||| ||||| ||||||||||||||||| || || |||||||| ||||| |||||   ||| |||| |  |  |  |   |  ||||  | |   |  |    |  |  |        |||   |  |  |              || |  ||     
GTCTTTGAAGGCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcctcttattcatctcttcctccttttatcttcacttcctggtatccatagtgatttaagtgttctaataggttaatcactttgagctgaacag-----

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatcttgtgactttatttgctgtttacttactaataaagtatagggcaggcctggtgcaatggtgagagctgtgtcactgccttactaggtcgt---------
|||||||||||||| |||||||| |||||||| |  ||||||||||| || ||||| |||||  || | | |   | |   |   |  |  |     |   | | |    |  | |  ||||  | |  ||    |||  |   |     ||  | | ||         
GTTTTTGAAGGAACATCTGGAATTGACAACAAGTTTACAACCGTGCAATTCACAGGAGAGgtaatttaccataaaaatccttcgtccctccagcatttcgcagatttgttgaaatgattggttgatttctgcttcctgcattttttttaaaccggtttgtgtctttcag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatcttgtgactttatttgctgtttacttacta-ataaagtatagggc--aggcctggtgcaatggtgagagctgtgtcactgccttactaggtcgt
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||       ||| |   | | || |   ||| |    |   |  | |||   ||   | |||    |       |||||||  | | ||    ||| |     
GTTTTTGAAGGCACTTCTGGAATTGACAACAAATACACAACCGTGCAATTTACTGGGGAGgtataaagccttttctttcttttagtgttttgcaatttgtgtggaatattctgcttggtccttaaaccggatacagagctggataagtgaa--acttgcata-

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatcttgtgactttatttgctgtttact-tactaataaagtatagggcaggcctggtgcaatggtgagagctgtgtcactgccttactaggtcgt
||||||||||||||||||||||| ||||||||||||||||| || || |||||||| |||||     ||||| |   |  || ||    |||   | | |  | | |||  || |    ||  | | ||   ||   |  ||  ||||||  |  |  | |
GTTTTTGAAGGAACTTCTGGAATTGACAACAAATACACAACTGTTCAATTTACAGGGGAGgtataaaatctttttcttgcatctgtcccttatcattcaagcagaatatcaggaacttttgcagaactgcctagca-taggtttctgcctagcatgcacat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102148|gb|CF062108.1|CF062108
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211182799|gb|FL070450.1|FL070450
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33102006|gb|CF061966.1|CF061966
EST:     GAACTTCTGAAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32908718|gb|CF013531.1|CF013531
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33100953|gb|CF060913.1|CF060913
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211182798|gb|FL070449.1|FL070449
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32945519|gb|CF050338.1|CF050338
EST:     GAACTTCTGGAATAGACAACAAATACACANCCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32933270|gb|CF038082.1|CF038082
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTTAATGG
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCA-TTTTTAATGG
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     AACAAATACTC-CCCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: AACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32944897|gb|CF049716.1|CF049716
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACACGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32846162|gb|CD985843.1|CD985843
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32933397|gb|CF038209.1|CF038209
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33100729|gb|CF060689.1|CF060689
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32942779|gb|CF047598.1|CF047598
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|13389395|gb|BG462701.1|BG462701
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32931129|gb|CF035941.1|CF035941
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCGGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211466593|gb|FL062044.1|FL062044
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT