Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCCTGCGTCATGTGGCTCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTCCTGGTTGACCAACTGGgtaagaactgaataccctattatcttctctgtgttcatttctctgcttatatatcaacaaaagatgaccctctgtgttcatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G180659_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g03350.1 (Oryza sativa), 5'ss of exon 5
CTTCCCTGCGTCATGTGGCTCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTCCTGGTTGACCAACTGGgtaagaactgaataccctattatcttc--tctgtgttca-----tttctctgcttatatatcaacaaaagatgaccctctgtgttcatcag----------------------------------------
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CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacacacaaactaattatgctctgtttttcttcaatcttctcccctgtttttgtctgaaatgaaaatgcctctgcttgatcttgcattctgatctgatttgtttttttcaactgattctctttcag
upper sequence: GRMZM2G180659_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G24520.1 (Glycine max), 5'ss of exon 6
CTTCCCTGCGTCATGTGGCTCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTCCTGGTTGACCAACTGGgtaagaactgaataccctattatcttctctgtgttcatttctctgcttatatatc---aacaaaagatgaccct-ctgtgttcatcag--
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CTCCCCTGCATCATGTGGCTTGCAATCTACAAACCAAGGAGATTCAGCTTGTCTTGGTGGGCCAACTGGgtatgtattattttgatttttgtttcaattattctcctttagttgagtccatttttaaagctaggattgatcttgctccattaattacag
upper sequence: GRMZM2G180659_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G06750.1 (Glycine max), 5'ss of exon 6
CTTCCCTGCGTCATGTGGCTCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTCCTGGTTGACCAACTGGgtaagaactgaatacc--ctattatcttctctgtgttcatttctctg----cttatatatcaacaaaagatgaccct--ctgtgttcatcag--
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CTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGGgtatg--ttgaattttgatttttgtttcaattattctcctttagttgagattccattttttaagctaggattaatcttgccccattaattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5510817|gb|AI857201.1|AI857201EST: TCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTGCTGGTTGACCAACTGG ATGTGCATCATTCTTGGGGTGCTCCTGATGATTCTGTCGCCCATCGGAGGG
genomic: TCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTCCTGGTTGACCAACTGGgtaagaactg ... tgttcatcagATGTGCATCATTCTTGGGGTGCTCCTGATGATTCTGTCGCCCATCGGAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCCTGCGTCATGTGGCTCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTCCTGGTTGACCAACTGGgtaagaactgaataccctattatcttctctgtgttcatttctctgcttatatatcaacaaaagatgaccctctgtgttcatcag
- - - - - - - - - - - - - - - - - - AAGAGG