Sequence
atgc intronic sequence ATGC exonic sequenceATCTACGATGATCTTGATCTACCCTTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGGgtattcatttcttttctagaagccgtcttaccccttgtactccctggctaaattggaagggacttgaattaatgcttcaatagaaataatgtataacacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G179793_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G35220.1 (Glycine max), 5'ss of exon 5
ATCTACGATGATCTTGATCTACCCTTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGGgtattcatttcttttctagaagccgtcttaccccttgtactccctg-gctaaattggaagggacttgaattaatgcttcaatagaaataatgtataacacc
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ATCTTTGACGACTTGGATTTGCCTTTTGCTAAATTGCGGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGgtaattataattttctttgtttgtgttctctttttgctatgaaacatgtcgacttggtttggctccttatttgagttttataaatcaacatgtccactgg-
upper sequence: GRMZM2G179793_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G04500.1 (Glycine max), 5'ss of exon 5
ATCTACGATGATCTTGATCTACCCTTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGGgtattcatttcttttctagaagccgtcttaccccttgtactccctggctaaattggaagggacttgaattaatgcttcaatagaaataatgtat-aacacc--
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ATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGgtaattgtaatttgctttgt--ttgtgct-ctctttttgctatgaaacaacatatgtgtaggcctggtttggctccttatttgagtttataaatcaacatgtcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18661101|gb|BM501210.1|BM501210EST: TTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGG GATGAGGAGTATTGTTGACCATTTGAATCAGAGCCGTGATTTTGGACGCCT
genomic: TTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGGgtattcattt ... caaattgcagGATGAGGAGTATTGTTGACCATTTGAATCAGAGCCGTGATTTTGGACGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTACGATGATCTTGATCTACCCTTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGGgtattcatttcttttctagaagccgtcttaccccttgtactccctggctaaattggaagggacttgaattaatgcttcaatagaaataatgtataacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG