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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAATCGTCAGACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcataggcactcatctctctcagatctcgtttactggagcatcaaagtgtcaactgcttataacccgcttcgcctctaccag

Basic information

species Zea mays
transcript GRMZM2G179737_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179737_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g03380.1 (Oryza sativa), 5'ss of exon 5
CTGCAATCGTCAGACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcataggcactcatctctctcagatctcgtttact-ggagcatcaaagtgtca---actgcttataacccgcttcg---cctctaccag-----------------------------------------------------------------------------------------------
|| |||||||||||||| |||||||||||||||| |||| |  |||||| |||||| ||||||||| |||||    ||| ||| |  |   || |   || | | | |  |    | |||   | ||  |  ||||  | |||    |  || | |                                                                                               
CTACAATCGTCAGACATTTCTAAAGATAAGCAAGCTGATTCTACTTTAGTAGACACGCTGAAGgtattcataattgctcttcttttgcccttcccccatatttgtatctcccctttttcagataatggattaaaccgacctcgatatccataacggatgtacgcatccacatatttgtatctcccgtagttgttatataactgaaagcttaaagatttctaaatgcttataacatatatgttctttactag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18385139|gb|BM418338.1|BM418338
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211029487|gb|FL265548.1|FL265548
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAG
EST: gi|20507208|gb|BQ279531.1|BQ279531
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211036859|gb|FL265587.1|FL265587
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211039303|gb|FL265600.1|FL265600
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAG
EST: gi|71432608|gb|DR813658.1|DR813658
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|13198687|gb|BG354489.1|BG354489
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTAC
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTAC
EST: gi|19350892|gb|BM895424.1|BM895424
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211034406|gb|FL265569.1|FL265569
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACC
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|19351534|gb|BM896066.1|BM896066
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211036870|gb|FL265598.1|FL265598
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACG
EST: gi|211036856|gb|FL265584.1|FL265584
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTT
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTT
EST: gi|101390191|gb|EB817028.1|EB817028
EST:     GCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: GCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|60353776|gb|DN220749.1|DN220749
EST:     ATATCTAAAAGATAAGCAAG-TGATTCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ATATCT-AAAGATAAGCAAGTTGA-TCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|91054662|gb|EB165080.1|EB165080
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211027045|gb|FL265537.1|FL265537
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|110515503|gb|EE020091.1|EE020091
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|32942386|gb|CF047205.1|CF047205
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|18384806|gb|BM418005.1|BM418005
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211029480|gb|FL265541.1|FL265541
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCAT
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCAT
EST: gi|91054011|gb|EB164429.1|EB164429
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|83279335|gb|DV943343.1|DV943343
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|149021621|gb|EE045803.2|EE045803
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|5268511|gb|AI770475.1|AI770475
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211031961|gb|FL265561.1|FL265561
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAG
EST: gi|148969450|gb|EE020256.2|EE020256
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|13198621|gb|BG354423.1|BG354423
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|60358592|gb|DN225565.1|DN225565
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|149087736|gb|EE287093.2|EE287093
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|16746010|gb|BM032440.1|BM032440
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         ATCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211029485|gb|FL265546.1|FL265546
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACAC
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACAC
EST: gi|32831746|gb|CD971424.1|CD971424
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211079592|gb|FK945962.1|FK945962
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|88758213|gb|DY542354.1|DY542354
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|18384808|gb|BM418007.1|BM418007
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|7216914|gb|AW563036.1|AW563036
EST:     ACATATCTAAAGATAAACAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|60398214|gb|DN231030.1|DN231030
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|211079594|gb|FK945964.1|FK945964
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACC
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|93012420|gb|EB637940.1|EB637940
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|18385304|gb|BM418503.1|BM418503
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCATTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|78087096|gb|DV515489.1|DV515489
EST:     GCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: GCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|91048207|gb|EB158625.1|EB158625
EST:     GATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: GATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|60398588|gb|DN231404.1|DN231404
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|149110590|gb|EE294202.2|EE294202
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
EST: gi|4610088|gb|AI600927.1|AI600927
EST:     ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAG                         CTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG
genomic: ACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcatag ... cctctaccagCTCTCCTTCACACGCTCAGAGTTTTCCATGGCATTCCCCTACGTTTCCACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCAATCGTCAGACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGgtaatcataggcactcatctctctcagatctcgtttactggagcatcaaagtgtcaactgcttataacccgcttcgcctctaccag

- - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG