Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtgagcaggtct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 5
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtgagcaggtct
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TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaacattggtgaatttgaatggatggtgggcag----
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcaggtct
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TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacagtgaatttaaatggtt--ttaacag----
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtgagcaggtct
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TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatggat-tgatttccccaatatacataa-----tgggggttaag----ggtgaattcaaatggttg--caacag----
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcaggtct
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TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggtt--ttaacag----
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagatt-gtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaac--attggtgaatttggatcaatggtgagcaggtct
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TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgcta-cag----
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtg--agcaggtct
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TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggct-tgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag----
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgt-ggtgcttaaa---cattggtgaatttggatcaatggtgagcaggtct
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TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatatgactgatttacgatgat-atga-tttccccaacttcatgaatattttggggcttaaaacttgttagtgaatttaaatggtc--ttaacag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71434755|gb|DR815805.1|DR815805EST: TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATT TTATGCACGAATTGTGTCTCATACACACTGATTTAAAGCCTGAGAACATTC
genomic: TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacat ... tgtgttgcagTTATGCACGAATTGTGTCTCATACACACTGATTTAAAGCCTGAGAACATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtgagcaggtct
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