1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCAATCCTGTCTGAAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttttactcaaattggtatttgtttttagatttttattatcatcatgcataccagactgagcacacttttttctctcgtacag
species | Zea mays |
transcript | GRMZM2G179097_T08 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGGTTTTGATCTATTGAACAGATTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTGAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|32930695|gb|CF035507.1|CF035507
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGATTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTGAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|31664323|gb|CD573048.1|CD573048
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCAATCCTGTCTGAAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttttactcaaattggtatttgtttttagatttttattatcatcatgcataccagactgagcacacttttttctctcgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG