1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCAATCCTGTCTGAAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttttactcaaattggtatttgtttttagatttttattatcatcatgcataccagactgagcacacttttttctctcgtacag
species | Zea mays |
transcript | GRMZM2G179097_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|32847543|gb|CD987224.1|CD987224
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGATTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTGAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|32832598|gb|CD972276.1|CD972276
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGATTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTGAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|32930695|gb|CF035507.1|CF035507
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGATTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTGAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|31664323|gb|CD573048.1|CD573048
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|60394713|gb|DN227583.1|DN227583
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|60345354|gb|DN212327.1|DN212327
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTEST: gi|60354973|gb|DN221946.1|DN221946
genomic: AAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
EST: TTTTGATCTA-TGAAACAGACTGCTGACTTATGACCCTGATAAG CGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
genomic: TTTTGATCTATTG-AACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttt ... tctcgtacagCGCATATCAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCAATCCTGTCTGAAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTATGACCCTGATAAGgtgcagtttttactcaaattggtatttgtttttagatttttattatcatcatgcataccagactgagcacacttttttctctcgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG