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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTGCAGCATCGAGCTGATGAAATTTGACATGGGAGGCTCTGCAGCTGTATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatttttcacagccgcctagctgtatagatgtagaggttttacccatattagtttatctgttaaatttctatgtttttttccccttctcacag

Basic information

species Zea mays
transcript GRMZM2G178958_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26557845|gb|CA830080.1|CA830080
EST:     TTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|22714950|gb|BU197547.1|BU197547
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|67022782|gb|CO451531.1|CO451531
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|71596246|gb|DR906997.1|DR906997
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|211121580|gb|FL034199.1|FL034199
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|22472974|gb|BU037454.1|BU037454
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|76291680|gb|DV031248.1|DV031248
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|71431472|gb|DR812522.1|DR812522
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|71323796|gb|DR798569.1|DR798569
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|5343060|gb|AI795470.1|AI795470
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|78121907|gb|DV540291.1|DV540291
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|71435919|gb|DR816969.1|DR816969
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|21843359|gb|BQ703940.1|BQ703940
EST:     GCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: GCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
EST: gi|5928970|gb|AW056262.1|AW056262
EST:     TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAG                         GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG
genomic: TATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatt ... cttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGCTGCAGCATCGAGCTGATGAAATTTGACATGGGAGGCTCTGCAGCTGTATTTGGTGCAGCTAAAGCTTTGGGACAAATCAAGCCTCCTGGAGTAGAGgtacttcatttttcacagccgcctagctgtatagatgtagaggttttacccatattagtttatctgttaaatttctatgtttttttccccttctcacag

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