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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatctgaagatagaacttctctctaaacattttttttactatgaactctgtataacacgagaatttgctgatgctttaatgtag

Basic information

species Zea mays
transcript GRMZM2G178822_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g47220.1 (Oryza sativa), 5'ss of exon 5
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatctgaagatagaacttctctc-----taaacatttt----ttttactatgaactctgtataacacgag-aatttgctgatgctttaatgtag------------
||||||  |||||||||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| | |            ||  |||||     |||| | |   | ||    | | |  |  || |   ||       |||||              
ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatctgaagataaatccataggaggaaatatgcatttcatacttttgcaaaatattcccagtgaaataaataactgattgtaagcaaaatgtgcactgatctatag

upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA01G35190.1 (Glycine max), 5'ss of exon 2
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatctgaagatagaacttctctctaaacattttttttactatgaactctgtataacacgagaatttgctgatgctttaatgtag---
 | |||||| |||||||||||||| |||||||||||||||||||| ||| | ||||| ||||| || |  || ||||||||| ||||     | |  ||||    |   ||   | | | || |   |  |   | |    | | |   |  | | | | |||  | |   
GTACAAGTTAATTAAGGAAGTTGGTGATGGGACTTTTGGGAGTGTCTGGAGAGCTATTAATAAGCAAACCGGTGAAGTTgtaagtat-----gctttaactgacatgataaaggtatctctatttcaagttggatgttgtcctaaatcctaataa-gttgtaaaattgcag

upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 2
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatctgaaga-tagaacttctctctaaacattttttttactatgaactctgtataacacgagaatttgctgatgctttaatgtag
 | |||||| |||||||||||||| ||||| || ||||||||||| ||| | || || ||||| || | ||| ||||||||| |||| |  ||| |||||     | | ||     ||   |  | ||   | | | |||   |      | || ||  |  |      
GTACAAGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgtttagagtagaatgatacgcgaag----ttacattgtgtgtgttttctctaatttg------tcctaatattacag-----

upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 2
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatc-tgaagatagaacttctctctaaacattttttttactatgaactctgtataacacgagaatt-tgctgatgctttaatgtag
 |  | | | || ||||||||||| |||||||||||||| ||||| ||||| || || ||||| |||| ||| ||||||||| | | | ||   ||||   || |  ||    |  |     |  ||  | ||| |||||  |  |  || | ||  || || ||     
GTATACGATAATCAAGGAAGTTGGTGATGGGACTTTTGGAAGTGTTTGGCGAGCAATAAATAAGCAGACTGGTGAAGTTgtaagcagcatgttcatagtttttattgctttgaaactgaaggaa-attgattctatataagtcagggtttgttcttttgtttcaacag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211443458|gb|FL042456.1|FL042456
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|211443465|gb|FL042463.1|FL042463
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|60345317|gb|DN212290.1|DN212290
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|211443464|gb|FL042462.1|FL042462
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGNCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|211443461|gb|FL042459.1|FL042459
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|211443466|gb|FL042464.1|FL042464
EST:     GACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAA-TGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|211443460|gb|FL042458.1|FL042458
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAANAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|211441339|gb|FL042453.1|FL042453
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|166575936|gb|EG274034.1|EG274034
EST:     AATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATG-AG-AAAAATATTATTCTTTTGAGGAATGTATG
genomic: AATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
EST: gi|71328344|gb|DR800801.1|DR800801
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAANAAATATTATTCTTTTG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTG
EST: gi|149089320|gb|EE178543.2|EE178543
EST:     GACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAAGT-                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTC
genomic: GACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAA-GTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTC
EST: gi|211443463|gb|FL042461.1|FL042461
EST:     GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTTGGGAGTGTATGGCGTGCTATGAATAAACAGAATGGCGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATG