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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTACTTCCAGAACATATCAGTGCCTGCCACATGCGCATAACCTTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaagtggcataagctaagtcttgcggcttccaattgataatgcttaaaagatattatctttttaagtgctatgctatttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacag

Basic information

species Zea mays
transcript GRMZM2G178169_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g33830.2 (Oryza sativa), 5'ss of exon 5
ATATTTACTTCCAGAACATATCAGTGCCTGCCACATGCGCATAACCTTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtatta---gaaagtggcataagctaagtct---tgcggcttccaattgataatgcttaa-aagatattatctttttaagtgctatgctatttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacag
|||||||||||| |||||| ||    |||| ||| ||||||||||||| ||||| || ||||||||||||||||| ||||| || ||||| ||||||||      |||  ||||      ||| | |   |    | |||| | |   |||||| |  ||| | ||     | || | | |    | | | |      |||                                       
ATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAGgtaaagagggaagctggcgatgtttaaatttgattttaacctccattagcatatgcttgatgagacaatac----tcaaattc-acatcactaactgtttggttacag------------------------------------

upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G37080.1 (Glycine max), 5'ss of exon 6
ATATTTACTTCCAGAACATATCAGTGCCTGCCACATGCGCATAACCTTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaagtggcataagctaagtcttgcggcttccaattgataatgcttaaaagatattatctttttaagtgct-atgctatttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacag
|||  | |||||||  ||| |  || | ||  || |||| ||  | |  || |||||||| ||| |||||||||||||||||||  ||||||||||||| | ||  || | | |||  || | |      ||   |||  | |   || |    |  ||| |  |||    || |  | | || | ||  |  |||    | |                               
ATACCTGCTTCCAGCCCATGTTGGTTCTTGTAACTTGCGAATTTCATATTCCGCACATAAAGATCTGAATATCAAATTTCAGTCAAATCGCAGCAGgtaat-gatggtagta-aagacaactatcatatatt---attcgtcagattttatcattggtatttccttagaaactcaaacaaattgtgaa--agctattgtattt-------------------------------

upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA18G49580.1 (Glycine max), 5'ss of exon 5
ATATTTACTTCCAGAACATATCAGTGCCTGCCACATGCGCATAACCTTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaagtggcataagctaagtcttgcggcttccaattgataatgcttaaaagatattatctttttaagtgctatgctatttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacag
 ||  | |||||||  ||| |  || | ||  || |||| ||  | |  || |||||||| ||| |||||||||||||||||||  ||||||||||||| | ||  || | | |||  |||| |      ||    || | | |   | |  | | || || ||  ||   | |    |||    || |  || |   ||                                 
-TACCTGCTTCCAGCCCATGTTGGTTCTTGTAACTTGCGAATTTCATATTCCGCACATAAAGATCTGAATATCAAATTTCAGTCAAATCGCAGCAGGtaat-gatggtagta-aagacaagtatcatatattattcttcagattttatcattggt-ttttccttagaaactcaaacaaattgtgaaagctattgtatttt---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101382157|gb|EB813134.1|EB813134
EST:     TTCTCTGCACATAANGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAA-CAGCAATTGAAGGGAT
genomic: TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaa ... gatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|6626417|gb|AW257949.1|AW257949
EST:     TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaa ... gatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|101399658|gb|EB821675.1|EB821675
EST:     TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaa ... gatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT