1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAGgtctgccttgcatacttgcactgcagtgtgttttgattattctgtacgtgtatgcttctgttcttatgtattatgatgactctttgttctttcag
species | Zea mays |
transcript | GRMZM2G177970_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAG GCTTCTATCTTTGTACAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGGEST: gi|211458161|gb|FL127573.1|FL127573
genomic: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAGgtctgccttg ... gttctttcagGCTTCTATCTTTGTACAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGG
EST: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAG GCTTCTATCTTTGTACAGTCTCATGTCCGTGCEST: gi|76012104|gb|DT939274.1|DT939274
genomic: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAGgtctgccttg ... gttctttcagGCTTCTATCTTTGTACAGTCTCATGTCCGTGC
EST: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAG GCTTCTATCTTTGTACAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGGEST: gi|211458163|gb|FL127575.1|FL127575
genomic: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAGgtctgccttg ... gttctttcagGCTTCTATCTTTGTACAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGG
EST: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAG GCTTCTATCTTTGTACAGTCTCATGT
genomic: CAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAGgtctgccttg ... gttctttcagGCTTCTATCTTTGTACAGTCTCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACTGCTGCAATATATCTTGCATGTGGCGTCGACAGCTCCAAGgtctgccttgcatacttgcactgcagtgtgttttgattattctgtacgtgtatgcttctgttcttatgtattatgatgactctttgttctttcag
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC