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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAATAAACCAACAGACATGGACTTCATTACTATTTTTGACACTGGTACTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGTgtaagtaaaacatctgatatatgattttgtcttccataaagttgacataattttttcaccaaatgggaagttagaaagacagattttttcaatgtaactgttgcggtgtacatctttttcag

Basic information

species Zea mays
transcript GRMZM2G177575_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148971473|gb|EE022167.2|EE022167
EST:     ATAACCCAGAGT                         TTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
genomic: ATAACCCAGAGTgtaagtaaaa ... tctttttcagTTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
EST: gi|149106837|gb|EE188735.2|EE188735
EST:     CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGT                         TTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
genomic: CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGTgtaagtaaaa ... tctttttcagTTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
EST: gi|86469449|gb|DY235819.1|DY235819
EST:     CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGT                         TTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
genomic: CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGTgtaagtaaaa ... tctttttcagTTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
EST: gi|78110126|gb|DV528541.1|DV528541
EST:     CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGT                         TTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
genomic: CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGTgtaagtaaaa ... tctttttcagTTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
EST: gi|78086094|gb|DV514487.1|DV514487
EST:     CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGT                         TTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT
genomic: CTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAACCCAGAGTgtaagtaaaa ... tctttttcagTTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCT