1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGAAATTCTCTAATGCCAAGGCGATCTCGTCATCTCAGTTTTTTGGTACTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctactcttgcgtcactctcggttcaaactgaattacttacttgaaaaaaaaaatgaaattctatttttgcaagacactagtcttatggctctaggggcatgcatgcagtacttggacaatccatttccagaagcttgctttcttcttaaatttcacctgttgtgaccag
species | Zea mays |
transcript | GRMZM2G176612_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|93015028|gb|EB640548.1|EB640548
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|67020510|gb|CO449259.1|CO449259
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CANAACAGAGAAGAAGAA-GAAAGCTCA-CTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCCGATCTTTNTGGCCGCAATGGATGCG-AEST: gi|78027094|gb|DV495481.1|DV495481
genomic: CAAAACAGAGAAGA-GAAAGAA-GCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATG-ATGCGGA
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|50324069|gb|CO519195.1|CO519195
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|5108137|gb|AI739850.1|AI739850
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|4296089|gb|AI438706.1|AI438706
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATGTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGACEST: gi|60339034|gb|DN206007.1|DN206007
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
EST: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCG GGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
genomic: CTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctac ... ttgtgaccagGGCTCTTCATCCATTTCAAGCGCGGATCTTTTTGGCCGCAATGATGCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAATTCTCTAATGCCAAGGCGATCTCGTCATCTCAGTTTTTTGGTACTCAAAACAGAGAAGAGAAAGAAGCTCAACTATCCCTTCAGAAATTTGCGgtgggtctactcttgcgtcactctcggttcaaactgaattacttacttgaaaaaaaaaatgaaattctatttttgcaagacactagtcttatggctctaggggcatgcatgcagtacttggacaatccatttccagaagcttgctttcttcttaaatttcacctgttgtgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA