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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATTTGAGAAGTGCTTCCAGATGAAATTTCCAGCTTGCACCATTGCTGCTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgcactatattatagctaagtattgttctttacatataaagccacattgctaagagttaatactttgttctttacttcttggtaaatcaag

Basic information

species Zea mays
transcript GRMZM2G174990_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174990_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g46720.2 (Oryza sativa), 5'ss of exon 4
AGAATTTGAGAAGTGCTTCCAGATGAAATTTCCAGCTTGCACCATTGCTGCTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgcactatattatagctaagtattgttctttacatataaagccacattgctaagagttaatactttgttctttacttcttggtaaatcaag
 || |||||||  |||||||| |||| |||||| || ||| | |||||||| |||| || ||||||||| || ||||||||| |||| ||||||||||||||||| || | |     ||| | || | ||  |||| |||   |    ||||| | || || |   |  ||   | | || |   ||  | ||||||
GGAGTTTGAGAGATGCTTCCAAATGAGATTTCCTGCCTGCTCGATTGCTGCAAAAAGGCCCATAGATTCATCTACTACTATTCTGGACGTGCAAGGCGTGgtatg-tgtatt----cataaccaaatgtttctcttaacactgag---cacatagttatgactctgtgattgact-tgtattatatga-atatcaag

upper sequence: GRMZM2G174990_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTTGAGAAGTGCTTCCAGATGAAATTTCCAGCTTGCACCATTGCTGCTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgcactatattatagctaagtattgttctttacatataaagccacattgctaaga-gttaatactttgttctttacttcttggtaaatcaag-------
 || || |||||  ||||     | || |||||||| || || |||||||| || | ||||||||||||   ||| |||||||||||||| ||||||||||||||||       ||| |  ||  ||     |    | |||||      |      || | ||| | ||||   | ||   ||  || | | ||||        
GGAGTTCGAGAAAAGCTTTGCCCTAAAGTTTCCAGCCTGTACTATTGCTGCAAAGAGGCACATAGATTCCAGCACAACTATTTTGGATGTTCAAGGCGTGgtatgctttctgtaattttttcttggtcaccattgcaaaatatattttggcccaatcaaaatgtttaaacttatcttttctatttctgatca-tcaattttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353713|gb|CD438070.1|CD438070
EST:     CTAAATAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
EST: gi|211483110|gb|FK977837.1|FK977837
EST:     TAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGGCGTG                         GGTTTCAAGAACTT
genomic: TAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGG-CGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTT
EST: gi|71426247|gb|DR807297.1|DR807297
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAAATTA-TCACACGAT
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAA-TTAATCACACGAT
EST: gi|211480220|gb|FK977825.1|FK977825
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCAC
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCAC
EST: gi|60351666|gb|DN218639.1|DN218639
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAG
EST: gi|101386148|gb|EB815117.1|EB815117
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTG                         GGTTTTCA-GAACTTCTCGAAATCTGC
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTT-CAAGAACTTCTCGAAATCTGC
EST: gi|211480224|gb|FK977829.1|FK977829
EST:     CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGNGCAAGGCGNG                         GGTTTCAAGAACTTCTCGAAATCTGCCAGA
genomic: CTAAAAAGCACATAGATTCGTCCACTACTATTTTGGATGTGCAAGGCGTGgtatgctgca ... gtaaatcaagGGTTTCAAGAACTTCTCGAAATCTGCCAGA