1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtcttctttttccttatatatgttgtttggatgtatgaactccgcactgagtggtaccatgttattatcaaataatcttatggcttcacttaacatattgattag
species | Zea mays |
transcript | GRMZM2G174830_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCEST: gi|78114801|gb|DV533189.1|DV533189
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCEST: gi|71433192|gb|DR814242.1|DR814242
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCEST: gi|211351120|gb|FL063241.1|FL063241
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
EST: TGGTAGTGTTTTGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGGATTCTGCGCCTCCTAAAGTTTGEST: gi|160481567|gb|EY254399.1|EY254399
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGG-ATTCTGCGCCTCCTAAAGTTTG
EST: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG ATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
genomic: TGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtc ... tattgattagATATTGAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAGgtatggagtcttctttttccttatatatgttgtttggatgtatgaactccgcactgagtggtaccatgttattatcaaataatcttatggcttcacttaacatattgattag
- - - - - - - - - - - - - - - - - - - TGGTGG