1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGTTGCTCACTGCGAGAATGAACATTTTACTTACGATATCACGTCTAAGTTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAGgtgaattattagaattgtatttgtttcttggagatctgcgtgccttaatatttttgacccatttgagctaatggaataaaatggaaaccattttgaaggctgcgttgggaccacttgtataaatcagtaaatctaacccctctaatataatttccatgtcacag
species | Zea mays |
transcript | GRMZM2G174644_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGACCAAGCTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAG GACTCGAGTGACACTNNNNNNNTCTGGTGTCGTGCTGGATTTGGTGCCACCEST: gi|211409590|gb|FL109891.1|FL109891
genomic: TTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAGgtgaattatt ... catgtcacagGACTCGAGTGACACTAAAAAAATCTGGTGTCGTGTTGGATTTGGTGCCACC
EST: TTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAG GACTCGAGTGACACTNNNNNNNTCTGGTGTCGTGTTGGATTTGGTGCCACCEST: gi|78025234|gb|DV493621.1|DV493621
genomic: TTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAGgtgaattatt ... catgtcacagGACTCGAGTGACACTAAAAAAATCTGGTGTCGTGTTGGATTTGGTGCCACC
EST: TTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAG GACTCGAGTGACACTNNNNNNNTCTGGTGTCGTGTTGGATTTGGTGCCACCEST: gi|5499280|gb|AI855147.1|AI855147
genomic: TTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAGgtgaattatt ... catgtcacagGACTCGAGTGACACTAAAAAAATCTGGTGTCGTGTTGGATTTGGTGCCACC
EST: TTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAG GACTCGAGTGACACTNNNNNNNTCTGGTGTCGTGTTGGATTTGGTGCCACC
genomic: TTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAGgtgaattatt ... catgtcacagGACTCGAGTGACACTAAAAAAATCTGGTGTCGTGTTGGATTTGGTGCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGCTCACTGCGAGAATGAACATTTTACTTACGATATCACGTCTAAGTTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAGgtgaattattagaattgtatttgtttcttggagatctgcgtgccttaatatttttgacccatttgagctaatggaataaaatggaaaccattttgaaggctgcgttgggaccacttgtataaatcagtaaatctaacccctctaatataatttccatgtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG