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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTGGAAGGGCGCTTTGAGCATGTTGTGTTATCATGCAGTACCACTTCTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactcattatactacatgtcccagatttatttttacaatttaacatgtactttccctttctctctgcaaactgtagtatcttgttgattacacat...

Basic information

species Zea mays
transcript GRMZM2G174315_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174315_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g14490.2 (Oryza sativa), 5'ss of exon 5
TCCAGTGGAAGGGCGCTTTGAGCATGTTGTGTTATCATGCAGTACCACTTCTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgta-----taaactcattatactacatgtcccagatttatttttacaatttaacatgtactttccctttctctctgcaaactgtagtatcttgttgattacacat
|||||||||||| || ||||||||| ||||||| ||||||||||| |||||||||||||  |||   |||||||||||||||||| |||||||||||||||||     ||  || |||  |  | |  |    |  | ||| ||   ||| || || |  |   |  || ||| | | |  |  | | | || |  || |     
TCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCAGAAAAGGCTTTAGAGgtaagtgttatgctaatttgaaaaaaaattgtggcatcattatt-tgattaaaaatctgttcctctgttatctgttcgatgttgaattttttatacatcaa----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18177115|gb|BM378325.1|BM378325
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTCCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|78077830|gb|DV506259.1|DV506259
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCCCCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|211451504|gb|FL478327.1|FL478327
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|78125709|gb|DV544093.1|DV544093
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|78025864|gb|DV494251.1|DV494251
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTCCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|87154057|gb|DY398846.1|DY398846
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|89247661|gb|DY619447.1|DY619447
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCCCCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|19351885|gb|BM896417.1|BM896417
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|4776055|gb|AI665058.1|AI665058
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTCCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|78083300|gb|DV511693.1|DV511693
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCCCCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|78080954|gb|DV509366.1|DV509366
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|88755923|gb|DY540064.1|DY540064
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|12970002|gb|BG266765.1|BG266765
EST:     CTGATCATGGCATTTATTGGATTGACCGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTCCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|22491379|gb|BU051302.1|BU051302
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|149095322|gb|EE180958.2|EE180958
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
EST: gi|18660661|gb|BM500981.1|BM500981
EST:     CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG                         CTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG
genomic: CTGATCATGGCATTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGgtataaactc ... ttttttgcagCTAATGATAAACAGCAAGAAGGAAACGACTCCACCTTCGCAGCAAAAGATG