1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAGgtattattagcatggctgtgcacatctgggagctatttctacaattttggtgcagtgtgtcactcccttatgcatgcatgtatgtgcgcgcgctagtgtg...
species | Zea mays |
transcript | GRMZM2G174284_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAG GCATATGTGCAACAACTAGAGAGCAGCAAGCTAAAACTTGCAAGCCTGGAGEST: gi|71449116|gb|DR830166.1|DR830166
genomic: GGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAGgtattattag ... gttttcaaagGCATATGTGCAACAACTAGAGAGCAGCAAGCTAAAACTTGCAAGCCTGGAG
EST: GGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAG GCATATGTGCAACAACTAGAGAGCAGCAAEST: gi|60397433|gb|DN230249.1|DN230249
genomic: GGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAGgtattattag ... gttttcaaagGCATATGTGCAACAACTAGAGAGCAGCAA
EST: GGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAG GCATATGTGCAACAACTAGAGAGCAGCAAGCTAAAACTTGCAAGCCTGGAG
genomic: GGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAGgtattattag ... gttttcaaagGCATATGTGCAACAACTAGAGAGCAGCAAGCTAAAACTTGCAAGCCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAGgtattattagcatggctgtgcacatctgggagctatttctacaattttggtgcagtgtgtcactcccttatgcatgcatgtatgtgcgcgcgctagtgtg
- - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - AAGGAA