1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtcaaatctgaacacagcaaacctatttctggttgattcaatgagttacatatttcttgtcctttcag
species | Zea mays |
transcript | GRMZM2G174204_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTNGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAEST: gi|78109120|gb|DV527537.1|DV527537
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCT-GAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAA
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|37398604|gb|CF636617.1|CF636617
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|71440545|gb|DR821595.1|DR821595
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60347312|gb|DN214285.1|DN214285
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: CCGCTGCCAAAG GTCAGACCTGTTGTTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|211464729|gb|FL207495.1|FL207495
genomic: CCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAEST: gi|50332540|gb|CO527666.1|CO527666
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGA
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|149079698|gb|EE168699.2|EE168699
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|211296298|gb|FL480002.1|FL480002
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|45847152|gb|CN071095.1|CN071095
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: TGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60354693|gb|DN221666.1|DN221666
genomic: TGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|15053622|gb|BI359167.1|BI359167
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|78109119|gb|DV527536.1|DV527536
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|71440546|gb|DR821596.1|DR821596
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|148933462|gb|EC877158.2|EC877158
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|17930472|gb|BM267432.1|BM267432
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|15053623|gb|BI359168.1|BI359168
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60350420|gb|DN217393.1|DN217393
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|211487760|gb|FL392997.1|FL392997
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60340980|gb|DN207953.1|DN207953
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|50332541|gb|CO527667.1|CO527667
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|22545768|gb|BU098142.1|BU098142
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|31359359|gb|CD443716.1|CD443716
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGGGCTACGAACTGGCAAGEST: gi|211464730|gb|FL207496.1|FL207496
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|15313826|gb|BI478973.1|BI478973
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCANGEST: gi|76917038|gb|DV166648.1|DV166648
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|22819549|gb|BU499639.1|BU499639
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtcaaatctgaacacagcaaacctatttctggttgattcaatgagttacatatttcttgtcctttcag
- - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - AAGGAA