1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCTGGCTTTTGGAGTGCAATGGCTTCAAATGTTACCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaatatcttgcatcttaaagatagtttgtttatgaacatgcattggcttcttttctgtcatgtccatgtgcaattgtccacttccatctctaattcctaatgcacttcatatgctctctttccacag
species | Zea mays |
transcript | GRMZM2G174107_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|60351427|gb|DN218400.1|DN218400
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|60354172|gb|DN221145.1|DN221145
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|16378321|gb|BI992391.1|BI992391
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|16377738|gb|BI992093.1|BI992093
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCCTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|32840783|gb|CD980464.1|CD980464
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|13178610|gb|BG349868.1|BG349868
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCCTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|32941693|gb|CF046512.1|CF046512
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|13558927|gb|BG550282.1|BG550282
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAEST: gi|32940452|gb|CF045271.1|CF045271
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACA
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|148937400|gb|EC881580.2|EC881580
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|5688709|gb|AI941724.1|AI941724
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|15313742|gb|BI478935.1|BI478935
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|211517932|gb|FL479804.1|FL479804
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|148940598|gb|EC885404.2|EC885404
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|83279370|gb|DV943378.1|DV943378
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|56462047|gb|CK986345.1|CK986345
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|24934366|gb|CA452584.1|CA452584
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|13126160|gb|BG316730.1|BG316730
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTTEST: gi|4624425|gb|AI615258.1|AI615258
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
EST: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAG GAATCCTTGGNCAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
genomic: CCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaa ... ctttccacagGAATCCTTGGACAACCTTAATCTCTTCTCTATCATTACAGTGATGTCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGGCTTTTGGAGTGCAATGGCTTCAAATGTTACCTTTCAATCCCGAAATGTATTGAGCAAGAAGCTCATGGTTAAGAAAGAGgtaactaaaatatcttgcatcttaaagatagtttgtttatgaacatgcattggcttcttttctgtcatgtccatgtgcaattgtccacttccatctctaattcctaatgcacttcatatgctctctttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA