1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCATTAGTCATGGAATCACGGATTCATCATAATGAACCTAGTTCTGTTCTGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctccattccaaaatagtattcgttttagctcttaattttttatatctatatttaacagatgatgataaatgaagacacatatatagaactaca...
species | Zea mays |
transcript | GRMZM2G172152_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCCEST: gi|71306315|gb|DR789300.1|DR789300
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: GCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCCEST: gi|211025722|gb|FL435830.1|FL435830
genomic: GCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTHTAGGCCATCCEST: gi|71763911|gb|DR961848.1|DR961848
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGT--- -T-GAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCCEST: gi|211249724|gb|FL399200.1|FL399200
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCCEST: gi|71763743|gb|DR961680.1|DR961680
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTTTAGGCCATCCEST: gi|211219779|gb|FL407451.1|FL407451
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGACAGGAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACEST: gi|91055454|gb|EB165872.1|EB165872
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTAC
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCCEST: gi|6695498|gb|AW288606.1|AW288606
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGNCAGCAGACAGAGATGGCCCTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCCEST: gi|76291509|gb|DV031077.1|DV031077
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTTTAGGCCATCCEST: gi|32827786|gb|CD967464.1|CD967464
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
EST: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAG GTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
genomic: TGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctc ... ctccttacagGTTGAAGATAATGACAGTGAAGATAGTGGTACGAGCATCTCTAGGCCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCATTAGTCATGGAATCACGGATTCATCATAATGAACCTAGTTCTGTTCTGTATTCAGGCTACTTCCAGAAGACAGCAGACAGAGATGGCACTAGTAAGgtactccctccattccaaaatagtattcgttttagctcttaattttttatatctatatttaacagatgatgataaatgaagacacatatatagaactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG