1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgcttgcggcctgtatctgcagcatcgttttctctgtctaatgataacttttttatgaacattttctctgcattcattttag
species | Zea mays |
transcript | GRMZM2G171745_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|166678942|gb|EG225373.1|EG225373
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACAEST: gi|78118434|gb|DV536820.1|DV536820
genomic: GGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACA
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|211178524|gb|FK980682.1|FK980682
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|211195518|gb|FL100642.1|FL100642
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|86472725|gb|DY239095.1|DY239095
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAAGTGAATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|211180926|gb|FK980688.1|FK980688
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGA-CATGEST: gi|71427328|gb|DR808378.1|DR808378
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|148943925|gb|EC889005.2|EC889005
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|148972927|gb|EE023942.2|EE023942
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|78112152|gb|DV530548.1|DV530548
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|74242379|gb|DT650293.1|DT650293
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|149089443|gb|EE178684.2|EE178684
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCEST: gi|211178525|gb|FK980683.1|FK980683
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGC
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|76931006|gb|DV172592.1|DV172592
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|78118433|gb|DV536819.1|DV536819
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|211180929|gb|FK980691.1|FK980691
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|29129753|gb|CB380457.1|CB380457
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|76931005|gb|DV172591.1|DV172591
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: TTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|71427327|gb|DR808377.1|DR808377
genomic: TTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|78112153|gb|DV530549.1|DV530549
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|31352916|gb|CD437273.1|CD437273
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAA-GGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|89251568|gb|DY623354.1|DY623354
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: AAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATGEST: gi|67021495|gb|CO450244.1|CO450244
genomic: AAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
EST: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
genomic: GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgct ... ttcattttagGTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAAGAACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGgcaagatgcttgcggcctgtatctgcagcatcgttttctctgtctaatgataacttttttatgaacattttctctgcattcattttag
- - - - - - - - - - - TCAGCT
- - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - AGCTGA