1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTGTTCTACTCTACGGTCCTCCGGGAACTGGGAAGACCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgattttttacttcattgatggcattcagtatttcttataattcaaatatggcttacataatgtctgaaaacag
species | Zea mays |
transcript | GRMZM2G171604_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTCCAAGCGCTATTATTGACAAATACATTGGAEST: gi|149076338|gb|EE164954.2|EE164954
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGA
EST: CCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCCACTTTTTTGA-G ATTGTTTCAAGCGCTATTATEST: gi|148999624|gb|EE036609.2|EE036609
genomic: CCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTT-GAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTAT
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|149111231|gb|EE294729.2|EE294729
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|87157334|gb|DY402123.1|DY402123
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTNCA-GCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTEST: gi|211475166|gb|FL103099.1|FL103099
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTT-CAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTT
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|148936301|gb|EC880384.2|EC880384
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTNCA-GCGCTATTATTTGACAA-TACATTGGAGAAAGTGCTCGTTEST: gi|93284400|gb|EB676664.1|EB676664
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTT-CAAGCGCTATTATT-GACAAATACATTGGAGAAAGTGCTCGTT
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|149080389|gb|EE169410.2|EE169410
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|148959843|gb|EE153075.2|EE153075
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTNCA-GCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTEST: gi|148953590|gb|EC898944.2|EC898944
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTT-CAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTT
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTNCA-GCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTEST: gi|22935727|gb|BU572002.1|BU572002
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTT-CAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTT
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTEST: gi|148967099|gb|EE018270.2|EE018270
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCT
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|148942358|gb|EC887376.2|EC887376
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAGGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGGGCTCGEST: gi|5325115|gb|AI783306.1|AI783306
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|211472646|gb|FL103083.1|FL103083
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|148931017|gb|EC873580.2|EC873580
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|67033051|gb|CO461800.1|CO461800
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|148979144|gb|EE026532.2|EE026532
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|67024916|gb|CO453665.1|CO453665
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|148964792|gb|EC906040.2|EC906040
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|149112655|gb|EE191390.2|EE191390
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|149100597|gb|EE186683.2|EE186683
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|149009942|gb|EE041784.2|EE041784
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
genomic: CCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgatttt ... ctgaaaacagATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTCTACTCTACGGTCCTCCGGGAACTGGGAAGACCCTATTGGCAAGGGCTATCGCCAGTAACATCGATGCCAACTTTTTGAAGgtgtgattttttacttcattgatggcattcagtatttcttataattcaaatatggcttacataatgtctgaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG