1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaagaagtgcagaacaaatttgtaaggtttattagcgttgcattatccctatagtgaaatgatgtccacagccacacgctgctatacacggttacattacatgtgcgcag
species | Zea mays |
transcript | GRMZM2G171406_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCACGAAGGTGGCCGCCAGTACGGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCEST: gi|71429669|gb|DR810719.1|DR810719
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTC
EST: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTCEST: gi|71441217|gb|DR822267.1|DR822267
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
EST: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTCEST: gi|91874947|gb|EB404904.1|EB404904
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
EST: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTCEST: gi|211318953|gb|FL142504.1|FL142504
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
EST: GCACGAAGGTGGCCGCCAGTACGGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTCEST: gi|93012917|gb|EB638437.1|EB638437
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
EST: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTCEST: gi|89250482|gb|DY622268.1|DY622268
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
EST: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTCEST: gi|89251407|gb|DY623193.1|DY623193
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
EST: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaagaagtgcagaacaaatttgtaaggtttattagcgttgcattatccctatagtgaaatgatgtccacagccacacgctgctatacacggttacattacatgtgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC