Sequence
atgc intronic sequence ATGC exonic sequenceTGAGCAGGAAGGGATGGTCTGGATCTGGCCCGGGGACGACCCACCCAAGGCTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAGgtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaacggccggccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171390_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 6
TGAGCAGGAAGGGATGGTCTGGATCTGGCCCGGGGACGACCCACCCAAGGCTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAGgtaaaattaaagctaggaattc-----ctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaac--ggccggccag----------------------------
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TGAGCAAGAAGGAATGGTTTGGATATGGCCTGGCAATGACCCACCGAAGTCGACTATCCCTTCTCTGCTGCCTCCTTCAGGATTTACAATTCACGCAGAGgtaaaaggagatcatgtcatgctgcagcaaccatactatgtggaactgtcctgtgcatttcaagatttttactggactgaaaagtaatggaattgttcttgatcatcaacag
upper sequence: GRMZM2G171390_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 6
TGAGCAGGAAGGGATGGTCTGGATCTGGCCCGGGGACGACCCACCCAAGGCTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAGgtaaaattaaagctaggaat--tcctacaatgcaatgcaatgcaa-tgcaatgaaatctcctgatgtaacg-gccggccag---------------------------------
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TGAGCAAGAAGGCATGGTTTGGATCTGGCCTGGTGATGGCACACCGGAGTCGACTATCCCTTCTCTGCAGCCCCCTTCAGGATTTACAATTCATGCAGAGgtaaaacgaaatcatgtcatactgcagcaatcttccatggtgaaagtgtcctgtgtttttcaagttttttttactggactgtaaagtaatggaatttatcttcatcatcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71445817|gb|DR826867.1|DR826867EST: CTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAG TGTTCTCTCTATCTTGCAGATAGTGATGGAGCTACCAGTTGAACATGGACT
genomic: CTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAGgtaaaattaa ... ggccggccagTGTTCTCTCTATCTTGCAGATAGTGATGGAGCTACCAGTTGAACATGGACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGCAGGAAGGGATGGTCTGGATCTGGCCCGGGGACGACCCACCCAAGGCTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAGgtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaacggccggccag
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