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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAATTGTAGACTCATGGGAATTATGGAATTCATTCAGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtcatacctgcccataccagtacttttgcagctatttattattttaatctataatgcaatagtattggtgttcacaaagattcattcttctatcag

Basic information

species Zea mays
transcript GRMZM2G169927_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169927_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g04660.1 (Oryza sativa), 5'ss of exon 5
AGTGAAATTGTAGACTCATGGGAATTATGGAATTCATTCAGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtcatacctgc----ccatacca-gtacttt--------tgcagctatttattattttaa-tctataatgcaatagtattggtgttca---caaagatt---cattcttctatcag
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AGTGATACCGTAGACTCTTGGGAATGGTGGAATTCATTTAGACTATTATGTGAGCATAGCAGTCAACTGTGTGTGGCGCTTGATGTTTTgtaagtgatgttcttgcattgttgcaccaagtgctttcttccaagtgaagatgtcactgataataaatctatcatgttatagttttggttttcattacaaaggttggctattcacttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19436370|gb|BM952780.1|BM952780
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTCGATATTTT                         GAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtca ... cttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGT
EST: gi|71447266|gb|DR828316.1|DR828316
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTT                         GAGCACTCTGCCATCAATAAACTCATTAACAAGGTGGTTTGGAGAGGCTGT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtca ... cttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTTTGGAGAGCCTGT
EST: gi|71772935|gb|DR970858.1|DR970858
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTT                         GAGCACTCTGCCATCAATAACCTCATTAGCAAGGTGGTT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGTGTGGCACTTGATATTTTgtaagtgtca ... cttctatcagGAGCACTCTGCCATCAATAAACTCATTAGCAAGGTGGTT