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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTGgtatgtcagctgaaaaactatctccatagccttgtcgatttcttaatttggagtccatggaattacttggtgccatattaaatggaatagttacaaaaatactactattaagctagtgatataacctttaaaaccgtttgctttacaaattacaatgaatttatcttgtgttttgaaaatgtatgcaaaag

Basic information

species Zea mays
transcript GRMZM2G169914_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169914_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g19460.1 (Oryza sativa), 5'ss of exon 5
CGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTGgtatgtcagctgaaaaactatctccatagccttgtcgatttcttaatttggagtccatggaattacttggtgccatattaaatggaatagttacaaaaatactactattaagctagtgatataacctttaaaaccgtttgctttacaaattacaatgaatttatcttgtgttttgaaaatgtatgcaaaag
 ||||||||||| ||| | ||||| ||||||||| | ||||||||||| || ||| |||||||| |||||||||| ||| | |||||||||||| || | |  | | || || | || ||   | |   || |||    || |||  |||||||           ||| ||     ||| ||||  |   |      | |||  |  || |     |  |        ||    ||||                                            
GGCTTCTGCAATCTTTATAGGAGTGTATGAACCAACCAAAAGAAAACTGCTAGAAATGTTTCCTGAAAATTTGAGTGCTGTGGCTCATTTGgtaagttaacacacagac-atattcaaagtaattttatttactt---ctgaagttaatggaat-----------atactagtgaaaattgttaagaggttttctgcaataaagtcatgctgctgtcccttgtctgaattatgctacag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88752899|gb|DY537040.1|DY537040
EST:     GAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTG                         ACTGCAGGAGCAATTGGAGGGGCTGCTTCTTCTCTCATTCGTGTTCCCACG
genomic: GAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTGgtatgtcagc ... tatgcaaaagACTGCAGGAGCAATTGGAGGGGCTGCTTCTTCTCTCATTCGTGTTCCCACG