1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgttcaaattacatacatacatttgattcgggaaatcaatgatattctggcagggtactttaagtgcatgaatagctcaaattctgaattactaaatgcag
species | Zea mays |
transcript | GRMZM2G169516_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|71430054|gb|DR811104.1|DR811104
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|32928612|gb|CF033424.1|CF033424
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: TTCAGGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|71438048|gb|DR819098.1|DR819098
genomic: TTCAGGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|24934455|gb|CA452673.1|CA452673
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: TTCAGGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|148972168|gb|EE023038.2|EE023038
genomic: TTCAGGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|149026795|gb|EE046156.2|EE046156
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTEST: gi|71324172|gb|DR798789.1|DR798789
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTTAT-GATGCTTGGCAACTTTACTAEST: gi|24765189|gb|CA400348.1|CA400348
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATT-ATTGATGCTTGGCAACTTTACTA
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|71442934|gb|DR823984.1|DR823984
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAAGAGT-CATTATTGATGCTTTGCAACTTTACTAEST: gi|6973599|gb|AW438335.1|AW438335
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAA-GAGTTCATTATTGATGCTTGGCAACTTTACTA
EST: CGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|71433348|gb|DR814398.1|DR814398
genomic: CGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCTAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|71431465|gb|DR812515.1|DR812515
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAAC-TGGAGGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTATEST: gi|71318677|gb|DR796095.1|DR796095
genomic: GGAAGTTTTTACAACTTGGA-GGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
EST: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG TGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
genomic: GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgtt ... ctaaatgcagTGCCCTCTTCTGTGCAAAGAGTTCATTATTGATGCTTGGCAACTTTACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGgtgccatgttcaaattacatacatacatttgattcgggaaatcaatgatattctggcagggtactttaagtgcatgaatagctcaaattctgaattactaaatgcag
- - - - - - - TTGGAG
- - - - - - - - TGGAGG
- - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - GCTGGA