1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGAAGTAGTAACGAGGATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAGgtacctcgaaagcttcaattatattactcaaaaacccttttaagcttgcatttttcttcctttagttgtcgaacgttcttaactctattattctggtatgctcag
species | Zea mays |
transcript | GRMZM2G168506_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTAACGAGGATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAG AGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATGEST: gi|4647604|gb|AI622679.1|AI622679
genomic: AGTAACGAGGATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAGgtacctcgaa ... gtatgctcagAGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATG
EST: GAGGAGAGGATATCTGCTTGG-CATTTCTTCCACCAG AGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATGEST: gi|12972561|gb|BG268043.1|BG268043
genomic: GAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAGgtacctcgaa ... gtatgctcagAGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATG
EST: CATTTCTTCCACCAG AGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATGEST: gi|83278553|gb|DV942561.1|DV942561
genomic: CATTTCTTCCACCAGgtacctcgaa ... gtatgctcagAGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATG
EST: TAACGAGGATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAG AGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATG
genomic: TAACGAGGATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAGgtacctcgaa ... gtatgctcagAGAATGGTGAAGCCATTCAGATATTACACTACCAGAATGGTGAGAAATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAAGTAGTAACGAGGATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAGgtacctcgaaagcttcaattatattactcaaaaacccttttaagcttgcatttttcttcctttagttgtcgaacgttcttaactctattattctggtatgctcag
- - - - - - - GAGGAT
- - - - - - - - - - AGAGGA
- - - - - - - - - - GAGGAG
- - - - - - - - - - - AGGAGA
- - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - GAGGAT