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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGGCTGAGATCTGAATTTGATTCTGGAACTCTGAGGCCATATTGTTTTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgctttgtggcataatgataaataaatctgtcctactcaactgtagcttgcacatagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcag

Basic information

species Zea mays
transcript GRMZM2G168249_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 7
GAGGAGGCTGAGATCTGAATTTGATTCTGGAACTCTGAGGCCATATTGTTTTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgctttgtggcataatgataaataaatctgtcctactcaactgtagcttgcacatagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcag
||||||||| ||||| ||  |||||||||| | ||||||||| |||| ||| || || |||||||||||||||||||| ||||||||||||||||||||||||  |   |||          |||  | ||    ||||||| | |||  || |        |||| |   | |  | | | | |||| ||| || |   ||||| |  |||||
GAGGAGGCTAAGATCCGAGCTTGATTCTGGGAATCTGAGGCCTTATTCTTTCATAGAGATTAATGGTCTTAAATTAGCTTCTCCAGAGAATATCTACAAGgtatgtgaacttctatcttggttgaatactatgattgtcctagtaaaccatatc--------agccat---gttaaaaggattataatgcatataat---tttaatatatgcag

upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G41490.1 (Glycine max), 5'ss of exon 7
GAGGAGGCTGAGATCTGAATTTGATTCTGGAACTCTGAGGCCATATTGTTTTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgctttgtggcataatgataaataaatctgtcctactcaactgtagctt--gcacatagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcag
||| ||  |||  || ||| ||||| | ||||   | |  ||||| | |||| | || ||||||||||| ||||| ||||| ||||||||||| || ||||||       ||  ||   ||    || |  |   ||| |      | | |  | |  ||| | |  | |    |||| |      |  ||| | || ||||    |  ||| |||
GAGAAGTTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCATACTCTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAAGgta----aagttcatgaagta----tatagtatcttgtgcctagttattattacataagcatacaatcatacttattccgaggtcatt-ttcttatagtcttgaatactcttccag

upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 9
GAGGAGGCTGAGATCTGAATTTGATTCTGGAACTCTGAGGCCATATTGTTTTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgctttgtggcataatgataaataaatctgtcctactcaactgtagcttgcacatagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcag
||| ||  |||  || ||| ||||| | ||||   | |  || ||   |||| | || ||||||||||| ||||| ||||| || |||||||| |||||||||       ||  ||         || |||  | | |  | |  |  |  ||  |  | ||      || | |        | || |     ||||||||             
GAGAAGCTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCGTACACTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCCGAGAATATTTACAAGgta----aagttcatga------agtatatag-tatcttgtgcctagtt--agtcttgatat----tccgaggtcattttcttatagtcttgatattctttcag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30052379|gb|AI065668.2|AI065668
EST:     TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG                         GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: gi|60348765|gb|DN215738.1|DN215738
EST:     TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG                         GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: gi|211040609|gb|FL332006.1|FL332006
EST:     TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG                         GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: gi|60344624|gb|DN211597.1|DN211597
EST:     TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG                         GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
EST: gi|31354612|gb|CD438969.1|CD438969
EST:     TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAG                         GTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT
genomic: TTATCGAAATTAATGGTCTTAAATTAGCATCTCCAGAGAATATCTACAAGgtacttctgc ... aaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTT