1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTGCCACCGGTACAGGTATCGCTCCGTTCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcaggcagcggtgttgtaaagttcacacactggacagagaatggcaaataatgtgtgagccgctcttgtgcag
species | Zea mays |
transcript | GRMZM2G168143_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|89758955|gb|DY687935.1|DY687935
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|8929977|gb|BE224741.1|BE224741
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|32844649|gb|CD984330.1|CD984330
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|32843935|gb|CD983616.1|CD983616
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|71441571|gb|DR822621.1|DR822621
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|32844588|gb|CD984269.1|CD984269
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGGTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|32923856|gb|CF028668.1|CF028668
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|148952933|gb|EE152405.2|EE152405
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGT-CCAACGAGCAGCTCGTTGEST: gi|89246872|gb|DY618658.1|DY618658
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|32848617|gb|CD988298.1|CD988298
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|8665549|gb|BE186365.1|BE186365
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|76923045|gb|DV169307.1|DV169307
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTGEST: gi|71304994|gb|DR788635.1|DR788635
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGEST: gi|78122840|gb|DV541224.1|DV541224
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTG
EST: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAG TTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
genomic: TCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag ... tcttgtgcagTTCAACGGTCTGGGCTGGCTCTTCCTGGGTGTTCCAACGAGCAGCTCGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCCACCGGTACAGGTATCGCTCCGTTCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcaggcagcggtgttgtaaagttcacacactggacagagaatggcaaataatgtgtgagccgctcttgtgcag
- - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC