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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCAAACCAAACCCAGCATTCAGTTATGGCTTCATCAATGGGAACCGAGAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAGgttgtcctatcctctgtgttaaacatcaaatttctctggtgatttggctcttatgcattgtttactgacccaatcttttctgttcatataactag

Basic information

species Zea mays
transcript GRMZM2G167932_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351085|gb|CD435442.1|CD435442
EST:     GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAG                         AGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG
genomic: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAGgttgtcctat ... atataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG
EST: gi|31354051|gb|CD438408.1|CD438408
EST:     GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAG                         AGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG
genomic: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAGgttgtcctat ... atataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG
EST: gi|8367891|gb|BE050836.1|BE050836
EST:     GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAG                         AGAGCAAATCTGTGTATGTCGG-AACG-GCCATCATCTGTAAGTGAGGCTG
genomic: GAAACCGAGGTCTGATGTCTTTGGTGAGGGTGCTTCCCATGATGACGAAGgttgtcctat ... atataactagAGAGCAAATCTGTGTATGTCGGCAACGTGCCATCATCTGTAAGTGAGGCTG