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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGgtggtacattacgtaatccttattgtattttgtttccttatgtgcttaaaccacttacaattaaatacacaaatataatttgttcatcatggttttttag...

Basic information

species Zea mays
transcript GRMZM2G167886_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167886_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 5'ss of exon 5
TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGgtggtacattacgtaatccttattgtattttgtttccttatgtgcttaaaccacttacaa-----ttaaatacacaaatataatttgttcatcatggttttttag
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TGGTGACCATACTGTTAAAATAATCGATTGCCAAACTGGGAAATGTTTGAAAGTGTTGCTTGGACATTGGCGCACTCCATGGGTGgtatgtctattaaaactggca--attgtttttcctagtgtacttcattttctgagatgctctttaagcacttctaaaagaattaacactaatactagtttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87298785|gb|DY470788.1|DY470788
EST:     AAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGGTG                       
genomic: AAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCAT--G-Ggtggtacatt ... tctgttgc
EST: gi|76015702|gb|DT942872.1|DT942872
EST:     AAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGG                         GTTAGATTCCATCCTCAGCGTTCTGATATTCTTGCTAGTGGAAGTTTGGAT
genomic: AAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGgtggtacatt ... tctgttgcagGTTAGATTCCATCCTCAGCGTTCTGATATTCTTGCTAGTGGAAGTTTGGAT
EST: gi|18384882|gb|BM418081.1|BM418081
EST:     AAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGG                         GTGGTTAGATTCCATCCTCAGCGTTCTGATATTCTTGCTAGT
genomic: AAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGgtggtacatt ... tctgttgcagGT--T-AGATTCCATCCTCAGCGTTCTGATATTCTTGCTAGT