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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTCAGCGTTCTGATATTCTTGCTAGTGGAAGTTTGGATTGTGAAGTTCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatccttgacaagccaattgtcatgatcactttttctctatttctaaagcaacacactttaattttttattaacatttcttccacag

Basic information

species Zea mays
transcript GRMZM2G167886_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167886_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 5'ss of exon 6
CATCCTCAGCGTTCTGATATTCTTGCTAGTGGAAGTTTGGATTGTGAAGTTCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatccttgacaagccaattgtcatgatcactttttctc---tatttctaaagcaacacactttaattttttattaacatttcttccacag
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CATCCATTACATCCTGATATCGTTGCTAGCGGAAGTTTGGATAATGAAGTTTGTCTATGGGATGCTAAAACCTCCCGTTGCATTGGATCACACTTCTTCTgtaatatctcttaatggactcattgtttttcttctctattcgtgagcatttctaaagcaaca-attgtaattatttttta-cattatgttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18385319|gb|BM418518.1|BM418518
EST:     TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCT                         ---G-CCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
EST: gi|87298785|gb|DY470788.1|DY470788
EST:     TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCT                         ---G-CCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
EST: gi|78092063|gb|DV520437.1|DV520437
EST:     TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCT                         ATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
EST: gi|22489334|gb|BU049257.1|BU049257
EST:     TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTC-                         -T--GCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG
genomic: TCGTCTCTGGGATGCTAAAACATCTCGCTGCACAGCAGAACTGGTCTTCTgtaattatcc ... tcttccacagATAGGCCAGTTGCATCAATTGCATTTCATGCAACTGGGGAGCTTCTGGCAG