1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGTCAAGAGGACAGTTCCGAGGGAAGAGATGAATACCAAAGATGGCCCTAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgtttgctatcaacaaacaaatgtcgaattcattttgtttatgatactgagaaggcacaaaatttcag
species | Zea mays |
transcript | GRMZM2G167356_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|148946214|gb|EC891510.2|EC891510
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|211107234|gb|FL370789.1|FL370789
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGGTGAAAGATCACTTTTCATTGTATGGTAAGGTGCTTEST: gi|148932748|gb|EE285380.2|EE285380
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTT
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|148939672|gb|EC884331.2|EC884331
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|148935082|gb|EC879124.2|EC879124
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|71439287|gb|DR820337.1|DR820337
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|78108850|gb|DV527267.1|DV527267
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|211074280|gb|FK950693.1|FK950693
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTTCTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|71427627|gb|DR808677.1|DR808677
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGAEST: gi|78076701|gb|DV505135.1|DV505135
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAG ATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgttt ... aaaatttcagATGAGTTGAAGGATCACTTTTCATTGTATGGTAAGGTGCTTGAACATCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTCAAGAGGACAGTTCCGAGGGAAGAGATGAATACCAAAGATGGCCCTAAGACAAGAAAGATCTTCATCGGTGGGCTACCTGCATCTCTTACTGAAGgttggtgtttgctatcaacaaacaaatgtcgaattcattttgtttatgatactgagaaggcacaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG